Locus 2304

Sequence ID 2R_DroMel_CAF1
Location 8,485,583 – 8,485,683
Length 100
Max. P 0.629138
window3793

overview

Window 3

Location 8,485,583 – 8,485,683
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 84.50
Mean single sequence MFE -23.60
Consensus MFE -19.80
Energy contribution -19.36
Covariance contribution -0.44
Combinations/Pair 1.36
Mean z-score -1.56
Structure conservation index 0.84
SVM decision value 0.20
SVM RNA-class probability 0.629138
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8485583 100 + 20766785
UGUCUCUGUCGGGGGUGUGGCUGCCACAUCUUUGAUCACUUCUUUCACAAUUUCUCUAGUGCUCUCCUGCUCCUCCACUUUAAUGGAAGCUUCGGCUUUU
.......(((((((((((((...)))))))))))))......................(.((......)).).((((......))))(((....)))... ( -23.80)
>DroSec_CAF1 9853 100 + 1
UGUCUCUGUCGGGGAUGUGGUUGCCACAUCUUUGAUCACAUCUUUUACGAUUUCCCUAUUGCUCUCCUGUUCCUCCAAUUUAAUGGAAGCUUCGGCUUUU
.......(((((((((((((...)))))))))))))...........((((......))))............((((......))))(((....)))... ( -23.40)
>DroSim_CAF1 10835 100 + 1
UGUCUCCGUCGGGGAUGUGGUUGCCACAUCUUUGAUGACAUCUUUCACGAUUUCCCUAGUGCUCUCCUGCUCCUCCACUUUAAUGGAAGCUUCGGCUUUU
((((...(((((((((((((...)))))))))))))))))..................(.((......)).).((((......))))(((....)))... ( -27.70)
>DroEre_CAF1 10085 100 + 1
UGUUUCCGUCGUGGGUGCGCUUGCCACAUCGUUGACCACCUCUUUUACGACUUCUCCAUUGCUCUCCUGCUCCUCCACUUUAAUGGAGGCUUUAACUGCU
.......((((((((((.(...((......))...)))))).....))))).........((.........((((((......))))))........)). ( -20.53)
>DroYak_CAF1 10300 100 + 1
UGUCUCCGUCGUGGGUGCGGUUGCCGCAUCCUUAACCACUUCUUUCACGACUUCCUUGUUGGUCUCCUGCUCCUCCACUUUAAUGGAAGCUUUAACUGCU
.......(((((((((((((...))))))))...............)))))......(((((......(((..((((......))))))).))))).... ( -22.56)
>consensus
UGUCUCCGUCGGGGGUGUGGUUGCCACAUCUUUGAUCACAUCUUUCACGAUUUCCCUAUUGCUCUCCUGCUCCUCCACUUUAAUGGAAGCUUCGGCUUUU
.(((...((((((((((((.....))))))))))))................................(((..((((......)))))))...))).... (-19.80 = -19.36 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:19 2006