Locus 2303

Sequence ID 2R_DroMel_CAF1
Location 8,484,265 – 8,484,385
Length 120
Max. P 0.984762
window3792

overview

Window 2

Location 8,484,265 – 8,484,385
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.73
Mean single sequence MFE -38.42
Consensus MFE -33.90
Energy contribution -34.46
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.88
SVM decision value 1.98
SVM RNA-class probability 0.984762
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8484265 120 - 20766785
CGCCGCCCAAUAAGGGUAACAGUUCGAACAACUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCUGGCUGCCGCACUCCCAUGUACACGCCAAAUU
....((((.....))))..(((.............)))....((((((((........))))..(((((.(((..((..((((((....))).)))...))))).)))))..)))).... ( -37.52)
>DroSec_CAF1 8538 120 - 1
CGCCGCCCAAUAAGGGUAACAGUUCGAACAAUUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCUGGCUGCCGCACUCCCAUGUACACGCCAAACU
....((((.....))))..(((.............)))....((((((((........))))..(((((.(((..((..((((((....))).)))...))))).)))))..)))).... ( -37.52)
>DroSim_CAF1 8558 120 - 1
CGCCGCCCAAUAAGGGUAACAGUUCGAACAAUUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCGGGCUGCCGCACUCCCAUGUACACGCCAAACU
....((((.....))))..(((.............)))....((((((((........))))..(((((.(((..((..((((((....))).)))...))))).)))))..)))).... ( -37.32)
>DroEre_CAF1 8773 117 - 1
CG---CCCAACAAGGGUAACAGCUCUAACAACUAUCUCAAUCUGGCGCUGUUCAAUUCCAGCAAGUGCAAGGGCAAGGAGGCGCCACCUGGCUGCCGCACGCCCAUGUACACGCCCAAUU
.(---(((.....))))..........................(((((((........))))..(((((.((((...(.((((((....))).))).)..)))).)))))..)))..... ( -41.10)
>DroYak_CAF1 8988 117 - 1
CG---CCCAACAAGGGUAACAGUUCCAACAACUAUCUCAAUCUGGCGCUGUUCAACUCCAGCAAGUGCAAGGGCAAGGAGGCGCCACCUGGCUGCCGCACGCCCAUGUACACACCAAAUU
.(---(((.....))))((((((.(((...............))).))))))............(((((.((((...(.((((((....))).))).)..)))).))))).......... ( -38.66)
>consensus
CGCCGCCCAAUAAGGGUAACAGUUCGAACAACUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCUGGCUGCCGCACUCCCAUGUACACGCCAAAUU
....((((.....)))).........................((((((((........))))..(((((.(((....(.((((((....))).))).)...))).)))))..)))).... (-33.90 = -34.46 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:18 2006