Locus 2302

Sequence ID 2R_DroMel_CAF1
Location 8,483,642 – 8,483,754
Length 112
Max. P 0.947209
window3791

overview

Window 1

Location 8,483,642 – 8,483,754
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 93.66
Mean single sequence MFE -47.72
Consensus MFE -45.34
Energy contribution -45.10
Covariance contribution -0.24
Combinations/Pair 1.21
Mean z-score -1.39
Structure conservation index 0.95
SVM decision value 1.37
SVM RNA-class probability 0.947209
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8483642 112 + 20766785
AUGCUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGCAGCAGGUGGUGACUGCCGUUUCUGAGCCUCCUUGGCAGCC
.....((.((.(((((...((((.(((((.((((.((((((....)))))).))))..))))).((((((((((((.....)).)))))))))).)))).))))).)).)). ( -53.00)
>DroSec_CAF1 7921 112 + 1
AUGCUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGUAGCAGGUGGUGACUGUCGUUUCUGAGCCUCCUUGGCAGCC
.....((.((.(((((...((((.(((((.((((.((((((....)))))).))))..))))).((((((..((((.....)).))..)))))).)))).))))).)).)). ( -46.40)
>DroSim_CAF1 7941 112 + 1
AUGCUGCGGUGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGCAGCAGGUGGGGACUGUCGUUUCUGAGCCUCCUUGGCAGCC
..(((((....(((((...((((.(((((.((((.((((((....)))))).))))..))))).(((((((((((.......).)))))))))).)))).))))).))))). ( -48.70)
>DroEre_CAF1 8156 112 + 1
AUGCUGCGGCGAAGGAAUAGCUUUCGAUGGUGGCGGUGGUGGCAACUUUGCGGCCAGAGGUCCCGGGCCGGCAGCAGGUGGUGAUUGCCGUUUUUGAGCCUCCUUGGCAGCC
..(((((..((((((.....))))))..((((((((..((.((..((((((((((...(....).)))).)))).))...)).))..))))).....)))......))))). ( -44.20)
>DroYak_CAF1 8371 112 + 1
AUGUUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGCGGCAACUUUGCGGCCAGAGGUCCUGGACCGGCAGCAGGUGGUGACUGCCGUUUCUGAGCCUCCUUGGCAGCC
.....((.((.(((((...((((.((((..((((.((((.(....).)))).))))...)))).(((.((((((((.....)).)))))).))).)))).))))).)).)). ( -46.30)
>consensus
AUGCUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGCAGCAGGUGGUGACUGCCGUUUCUGAGCCUCCUUGGCAGCC
.....((.((.(((((...((((.((((..((((.((((((....)))))).))))...)))).((((((((((((.....)).)))))))))).)))).))))).)).)). (-45.34 = -45.10 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:17 2006