Locus 230

Sequence ID 2R_DroMel_CAF1
Location 1,566,094 – 1,566,202
Length 108
Max. P 0.914781
window507

overview

Window 7

Location 1,566,094 – 1,566,202
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.71
Mean single sequence MFE -24.09
Consensus MFE -15.02
Energy contribution -15.80
Covariance contribution 0.78
Combinations/Pair 1.12
Mean z-score -2.64
Structure conservation index 0.62
SVM decision value 1.10
SVM RNA-class probability 0.914781
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1566094 108 - 20766785
CAUUUCUCCAACUGCUCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUUUGACUGGCUACACGCCAG--------UGGG-UC---UCACUGAGGAGGCU
...............................................(((((((..(((....((((.....((((((.....)))))--------))))-).---)))..))))))).. ( -28.60)
>DroSec_CAF1 2006 108 - 1
CAUUUCUCCAACUACUCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCAG--------UGGG-UC---UCACUGAGGAGGCU
...............................................(((((((..(((....((((.....((((((.....)))))--------))))-).---)))..))))))).. ( -28.60)
>DroSim_CAF1 1390 108 - 1
CAUUUCUCCAACCACUCAUUCAAUAACACGAACUACAACCUUUCCAACCUCCUCUCUGACAUCACCCCCCUGACUGGUUACACGCCAG--------UGGG-UC---CCACUGAGGAGGCU
...............................................(((((((..((.....((((.....((((((.....)))))--------))))-).---.))..))))))).. ( -24.30)
>DroEre_CAF1 1328 108 - 1
CAUUUCUCCAGCUACUCAUUCAACAACACGAACUACGACCUUUACAACCUCCUCUCUGACAUCACCCCGCUAACUGGCUACACGCCCG--------UGGG-UC---UCACUGAGGAGGCG
...............................................(((((((..(((....((((((......(((.....)))))--------.)))-).---)))..))))))).. ( -24.20)
>DroYak_CAF1 1318 108 - 1
CAUUUUUCCAACUACUCAUUCAAUAACACGAACUACGACCUUUACAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCCG--------UGGG-UC---UCACGGAGGAUGCU
.................................................((((((.(((....((((.....((.(((.....))).)--------))))-).---))).)))))).... ( -19.20)
>DroAna_CAF1 1294 120 - 1
CCACACUCACACUUGUCGUUCAACCCAACAAAAUACGAAGUGACCAGCCUCCUCUCCGAUGUCACCCCCUUAACAGGGUACACUCCAAACUCAGCGCAGGCUCAGAGCACCGAAGAUGAC
.....(((.((((..((((...............))))))))...((((((((....(((((.((((........))))))).)).......)).).)))))..)))............. ( -19.66)
>consensus
CAUUUCUCCAACUACUCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCAG________UGGG_UC___UCACUGAGGAGGCU
...............................................(((((((..(((......(((.......(((.....)))...........)))......)))..))))))).. (-15.02 = -15.80 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006