Locus 2298

Sequence ID 2R_DroMel_CAF1
Location 8,481,677 – 8,481,775
Length 98
Max. P 0.920132
window3782

overview

Window 2

Location 8,481,677 – 8,481,775
Length 98
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.10
Mean single sequence MFE -35.42
Consensus MFE -32.12
Energy contribution -31.72
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.91
SVM decision value 1.13
SVM RNA-class probability 0.920132
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8481677 98 + 20766785
CGACAUUUUUC-----UUUCCCCGUCGC-CAGGCGUU-CAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC
((((.......-----(((((((((.((-(((...((-(((...)))))..)))))((((..(...((((((...)).)))).)..))))))))))))))))).. ( -35.01)
>DroSec_CAF1 5989 96 + 1
CGACAUUUU--------UUCUCCGUCGC-CAGGCAUUCCAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC
((((....(--------((((((((.((-(((...((((((...)))))).)))))((((..(...((((((...)).)))).)..))))))))))))))))).. ( -35.60)
>DroSim_CAF1 6013 96 + 1
CGACAUUUU--------UUCCCCGUCGC-CAGGCAUUCCAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC
((((....(--------((((((((.((-(((...((((((...)))))).)))))((((..(...((((((...)).)))).)..))))))))))))))))).. ( -38.60)
>DroEre_CAF1 6228 99 + 1
CGACAUUUUUUUUGCUUUUCCCCGUCGC-CAGAC-----AUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC
((((............((((((((((..-..)))-----...((((....))))((((((..(...((((((...)).)))).)..))))))))))))))))).. ( -33.40)
>DroYak_CAF1 6409 93 + 1
CGACAUUUUU-------UUCCCCGUCGCCCAGAC-----GUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC
((((.....(-------(((((((((.....)))-----...((((....))))((((((..(...((((((...)).)))).)..))))))))))))))))).. ( -34.50)
>consensus
CGACAUUUUU_______UUCCCCGUCGC_CAGGC_UU_CAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC
((((.............(((((((((.....)))........((((....))))((((((..(...((((((...)).)))).)..)))))))))))).)))).. (-32.12 = -31.72 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:08 2006