Locus 229

Sequence ID 2R_DroMel_CAF1
Location 1,565,626 – 1,565,734
Length 108
Max. P 0.525099
window506

overview

Window 6

Location 1,565,626 – 1,565,734
Length 108
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 86.07
Mean single sequence MFE -37.08
Consensus MFE -26.08
Energy contribution -27.00
Covariance contribution 0.92
Combinations/Pair 1.21
Mean z-score -1.64
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.525099
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1565626 108 + 20766785
-UGAUCGGGCGGUGGUUUCUUUCCUGGACUUGGGCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUUACGUUGGGUAAUGGACUUUGCUU
-.....((((((.((((..((.(((((((((((.(......))))))))).((((......))))...(((((....))))).........))).))..)))))))))) ( -33.10)
>DroSec_CAF1 1538 108 + 1
-UGAUCGAGGGGAGGUUUCUUUCCUGGACUUGGUCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUCACCUUGGGUAACGGACUUUGCUU
-...(((((((.(((.......)))(((((((((.......))))))))).)))))))....(((((((((((....)))))...))))))((((((......)))))) ( -38.10)
>DroSim_CAF1 922 108 + 1
-UGAUCGGGGGGAGGUUUCUUUCCCGGACUUGGUCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUCACCUUGGGUAAUGGGCUUUGCUU
-......(((..((....))..)))(((((((((.......)))))))))((((....((..(((((((((((....)))))...))))))..))...))))....... ( -42.50)
>DroEre_CAF1 853 109 + 1
GUGAUCGUGGAGAGCUUUCUUUCCUGGACGUGGUCGCUUUAGCUAGGUUCAGUCUUGAACUAGAGGUGGCCGAGCUUUUGGCAGCCACCUUGGGUAAAGGACUUUGCUU
(((((((.((((((....))))))......))))))).......((((..((((((..(((.((((((((...((.....)).)))))))).)))..))))))..)))) ( -39.60)
>DroYak_CAF1 856 108 + 1
-UGAUCGAAGGGAAUUUUCUUUCCUAGACGGGGACGCUGUAGCUAAGUUAAGUCUUGAAUUAGAAGUGGCCGAAAUUUUGGCAGCCCCGUUGGGUAAUGGACUUUGCUG
-........(((((......))))).(((((((.((((....((((.(((.....))).)))).))))(((((....)))))..))))))).(((((......))))). ( -32.10)
>consensus
_UGAUCGAGGGGAGGUUUCUUUCCUGGACUUGGUCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUCACCUUGGGUAAUGGACUUUGCUU
........((.((((((..((.(((((((((((.(......)))))))))............(((((((((((....)))))...))))))))).))..)))))).)). (-26.08 = -27.00 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:03 2006