| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,406,018 – 8,406,111 |
| Length | 93 |
| Max. P | 0.952426 |
| Location | 8,406,018 – 8,406,111 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 92.16 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -23.66 |
| Energy contribution | -23.90 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8406018 93 + 20766785 ----UCAAGAUUUUUCUUUCUGUGUGCCGAUUGCCCUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU ----..((((....)))).........((((.((((((((((((((..(((((...((....))..)).)))...))))))))))...)))))))). ( -28.40) >DroSec_CAF1 17399 97 + 1 AUAUGCAAGAUAUUUCUCUCUGUGUGCCGAUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU .(((((((((......))).)))))).((((.((((((((((((((..(((((...((....))..)).)))...)))))))))))...))))))). ( -29.20) >DroSim_CAF1 17034 97 + 1 AUAUGCAAGAUAUUUCUUUCUGUGUGCCGCUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU .((((((.((........)))))))).....(((((((((((((((..(((((...((....))..)).)))...)))))))))))...)))).... ( -28.30) >DroEre_CAF1 19245 97 + 1 AUAUGCAAUGAAUUUCUUUCUGUGUGCCGAUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGCUUUGUAUCUGUAUCUGGGCAUUGU ....(((..(((.....)))....)))((((.((((((((((((((..(((((...((....))..)).)))...)))))))))))...))))))). ( -28.90) >DroYak_CAF1 17064 97 + 1 AUAUGUCAUAAAUUUCUUUCCGUGUGCCGAUUGCCGCGCAGAUACAUCUGCUGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU ..(((((.............((((.((.....))))))((((((((..(((.((((((..........))))))..)))..)))))))))))))... ( -26.10) >consensus AUAUGCAAGAUAUUUCUUUCUGUGUGCCGAUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU ...............................(((((((((((((((..(((((...((....))..)).)))...)))))))))))...)))).... (-23.66 = -23.90 + 0.24)
| Location | 8,406,018 – 8,406,111 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 92.16 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -19.86 |
| Energy contribution | -20.06 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952426 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8406018 93 - 20766785 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCAGGGCAAUCGGCACACAGAAAGAAAAAUCUUGA---- ....(((((.....((((((((....((.((((.((....))))))))...))))))))..))))).............((((....))))..---- ( -25.30) >DroSec_CAF1 17399 97 - 1 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAUCGGCACACAGAGAGAAAUAUCUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))....(((...(((.(....).)))))).... ( -24.50) >DroSim_CAF1 17034 97 - 1 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAGCGGCACACAGAAAGAAAUAUCUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))....(((...(((.(....).)))))).... ( -24.50) >DroEre_CAF1 19245 97 - 1 ACAAUGCCCAGAUACAGAUACAAAGCGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAUCGGCACACAGAAAGAAAUUCAUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))....(((....(((.....)))..))).... ( -22.70) >DroYak_CAF1 17064 97 - 1 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCAGCAGAUGUAUCUGCGCGGCAAUCGGCACACGGAAAGAAAUUUAUGACAUAU ....((((((((((((..........((......))....((....))...))))))))...)))).(((.....)))................... ( -19.60) >consensus ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAUCGGCACACAGAAAGAAAUAUCUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))............................... (-19.86 = -20.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:33 2006