Locus 228

Sequence ID 2R_DroMel_CAF1
Location 1,564,562 – 1,564,660
Length 98
Max. P 0.696430
window505

overview

Window 5

Location 1,564,562 – 1,564,660
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 72.45
Mean single sequence MFE -33.70
Consensus MFE -21.31
Energy contribution -23.09
Covariance contribution 1.79
Combinations/Pair 1.18
Mean z-score -1.40
Structure conservation index 0.63
SVM decision value 0.34
SVM RNA-class probability 0.696430
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1564562 98 + 20766785
GGCCGCACCAGGCCCACGAUUCGUUUUGAAUAUCUCGCAAAACGUGGUGCAGGUGGGAGCCGGGCCACUGCUUUUGCACUGAGAGUUUAGUGCGCCGA
((((.((((..((((((.....((((((.........)))))))))).)).)))).).))).(((((((((((((.....))))))..)))).))).. ( -37.40)
>DroSim_CAF1 15919 98 + 1
GGCCGCACCAGGCCCACGAUUCCUUUUGAAUAUCUCGCAAAACGUGGUGCAGGUGGGAGCCGGGCCACUGCUCUUGCACUGAGAGUUUAGUGCGCCGA
((((.((((..(((((((.....(((((.........)))))))))).)).)))).).))).(((((((((((((.....))))))..)))).))).. ( -39.70)
>DroYak_CAF1 20367 85 + 1
GGCUCUACCAGGCUAACAUUUCUUUCUA-------------ACCGACUGCAGAUAGUGGCCGGGCAAAUUUUUCUGCACUGAGAGUUUGCUUCGCCGA
(((....((.(((((..(((((..((..-------------...))..).))))..)))))))((((((((((.......))))))))))...))).. ( -24.00)
>consensus
GGCCGCACCAGGCCCACGAUUCCUUUUGAAUAUCUCGCAAAACGUGGUGCAGGUGGGAGCCGGGCCACUGCUUUUGCACUGAGAGUUUAGUGCGCCGA
((((.((((..(((((((........................))))).)).)))).).))).(((((((((((((.....))))))..)))).))).. (-21.31 = -23.09 +   1.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:01 2006