Locus 2278

Sequence ID 2R_DroMel_CAF1
Location 8,397,611 – 8,397,731
Length 120
Max. P 0.676558
window3740

overview

Window 0

Location 8,397,611 – 8,397,731
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.22
Mean single sequence MFE -42.88
Consensus MFE -25.75
Energy contribution -24.70
Covariance contribution -1.05
Combinations/Pair 1.40
Mean z-score -1.82
Structure conservation index 0.60
SVM decision value 0.30
SVM RNA-class probability 0.676558
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8397611 120 - 20766785
CAGUGAGAAUAUCGCGGAACAGGCGACAUACUCCGGCUUCCAGUCGGAAAAUGGCCUGAUUUGCCGGGGUCCUCAGGUCGAGCACUCGGUUGUCCAAGCGCGUGUCCUGGUUCACGCGAA
...........(((((((((.((.(((((..((((((.....))))))...((((((((...((....))..)))))))).((.((.((....)).)).))))))))).)))).))))). ( -46.80)
>DroVir_CAF1 10586 120 - 1
CGGUCAAAAUAUCGCGGAACAAACGACAUACGCCAGCCUCCAGGCGAAAAAUGGCCUGAUUUGCUGGCGUUCUUAAGUCGAGUACGCGGUUAUCUAGUCUGGUGUCCUGGUUGACGCGUA
(((.(.....((((((..((...((((..((((((((...(((((........)))))....))))))))......)))).)).))))))......).)))(((((......)))))... ( -42.60)
>DroGri_CAF1 13793 120 - 1
CGGUCAAUAUAUCACGGAACAAACGGCAAACGCCGGCCUCCAGGCGAAAAAUGGCCUGAUUGGCUGGUGUCCUCAGAUCGAGCACUCGAUUAUCCAAUCUAGUGUCCUGAUUGACGCGUA
((((((((....((((((......((...(((((((((..(((((........)))))...)))))))))))...((((((....))))))......))).))).....)))))).)).. ( -43.50)
>DroWil_CAF1 11092 120 - 1
CGGUCAAUAUAUCACGGAACAAACGACACACUCCGGCUUCCAGGCGGAAUAUAGCCUGAUUCGCUGGUGUUCUCAAAUCCAAAACACGAUUAUCCAGUCUAGUGUCCUGAUUGACGCGUA
((((((....((((.(((.((...(((..((.(((((...(((((........)))))....))))).)).....((((........)))).....)))...))))))))))))).)).. ( -32.60)
>DroMoj_CAF1 14135 120 - 1
CGGUGAGAAUGUCGCGGAAGAGACGACAGACGCCAGCUUCCAGGCGAAAGAUGGCCUGGUUGGCUGGUGUGCGUAGAUCAAGCACACGAUUAUCCAGUCUCGUGUCCUGAUUAACGCGUA
.........((((.(....).))))((..(((((((((.((((((........))))))..)))))))))((((.(((((.(.((((((..........))))))).))))).)))))). ( -51.90)
>DroAna_CAF1 8976 120 - 1
CGGUGAGAAUGUCACGGAACAGACGGCACACGCCAGCCUCCAGCCUGAAAAUGGCCUGGUUGGCAGGAGUUCUCAGAUCUAGUACUCGGUUGUCCAAACGCGUGUCCUGGUUGACGCGGA
(.((((.....)))).)....((((((....(((((((....(((.......)))..)))))))..((((.((.......)).)))).))))))......((((((......)))))).. ( -39.90)
>consensus
CGGUCAAAAUAUCACGGAACAAACGACACACGCCAGCCUCCAGGCGAAAAAUGGCCUGAUUGGCUGGUGUUCUCAGAUCGAGCACUCGAUUAUCCAAUCUCGUGUCCUGAUUGACGCGUA
..((((....((((.(((....((.....((((((((...(((((........)))))....)))))))).....((((........))))..........)).)))))))))))..... (-25.75 = -24.70 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:29 2006