Locus 2269

Sequence ID 2R_DroMel_CAF1
Location 8,361,954 – 8,362,062
Length 108
Max. P 0.609699
window3723

overview

Window 3

Location 8,361,954 – 8,362,062
Length 108
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.76
Mean single sequence MFE -47.47
Consensus MFE -26.80
Energy contribution -27.17
Covariance contribution 0.36
Combinations/Pair 1.15
Mean z-score -1.84
Structure conservation index 0.56
SVM decision value 0.15
SVM RNA-class probability 0.609699
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8361954 108 - 20766785
CAGGUGGUGGCCGAGGGCGGUUGGCAGGGGGAUCCCUUG-CCGCCGAGCUCACCCAGCGACCCUCCCAAUCCGGAAGCUCCAAUU--CCGGUGGAGUACCACACGGAAGAU
...((((((.(((((((((((.((((((((...))))))-)))))).(((.....)))..))))).....((((((.......))--)))).))..)))))).(....).. ( -50.60)
>DroSec_CAF1 445 108 - 1
CAGGUGGUGGCUGAGGGCGGUUGGCAGGGGGAUCCCUUG-CCGCCGAGCUCUUCCAGUGGCCCUCCCAAUCCGGAAGCUCCAAUC--CCGGUGGAGUACCACACUGAAGAU
(((((((((.(((((((((((.((((((((...))))))-)))))..(((.....))).))))))(((..((((...........--))))))))))))))).)))..... ( -49.60)
>DroSim_CAF1 445 108 - 1
CAGGUGGUGGCCGAGGGCGGUUGGCAGGGGGAUCCCUUG-CCGCCGAGCUCUCCCAGCGGCCCUCCCAAUCCGGAAGCUCCAAUU--CCGGUGGAAUACCACACGGAAGAU
...((((((...(((((((((.((((((((...))))))-)))))..(((.....))).))))))(((..((((((.......))--)))))))..)))))).(....).. ( -53.10)
>DroEre_CAF1 446 108 - 1
CAGGUGGUGGCCGAGGGCGGCUGGCAGGGAGAUCCCUUG-CCGCCAGGCCCACCCAACGGCAGUUCCAAUCCGGACGCACCAAUC--CCGGUGGAAUACCACACGGAAGAU
..((((((((((...((((((....((((....)))).)-))))).)).))))).....((.((((......)))))))))....--(((((((....)))).)))..... ( -49.00)
>DroYak_CAF1 445 108 - 1
CAGGUGGUGGCCGAGGGCGGUUGGCAGGGAAAUCCCUUG-CCGCCGAGCUCUCCCGAUGGCAACCCCAAUCCGGAGGCACCAAUC--ACGGUGGAGUACCACACGGAAGAU
....(((((.(((((..((((.(((((((.....)))))-))))))..)))(((.(((((.....)).))).)))))))))).((--.((((((....)))).)))).... ( -46.50)
>DroPer_CAF1 459 93 - 1
CAGGUGGUGGCCGAGGGCGGCUGGCAGGG--AUCCCCCGAACGACCAGAUCCUGCUU----------------CAGCCACCGAUCGUACGGUCGAAUACCACACCGAGGAC
..(((((((((.((((.((((((((.(((--....)))....).))))...))))))----------------).)))))(((((....))))).......))))...... ( -36.00)
>consensus
CAGGUGGUGGCCGAGGGCGGUUGGCAGGGGGAUCCCUUG_CCGCCGAGCUCUCCCAGCGGCCCUCCCAAUCCGGAAGCACCAAUC__CCGGUGGAAUACCACACGGAAGAU
...((((((((((.(((((((.(((((((.....))))).)))))..)))).....................((.....)).......))))....)))))).(....).. (-26.80 = -27.17 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:13 2006