| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,351,782 – 8,351,877 |
| Length | 95 |
| Max. P | 0.888359 |
| Location | 8,351,782 – 8,351,877 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 90.32 |
| Mean single sequence MFE | -13.06 |
| Consensus MFE | -10.86 |
| Energy contribution | -11.10 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8351782 95 - 20766785 UCCGCAC---UAUAUUCCCUUCAUCUACUCUCCUUGCAUAUUUGGAAUUUCAAUUAACCUAAUUUAAUUGAAACUAUGUCUGCAGUCAAUUGUGUCUA ...((((---...(((..((.((.......(((..........))).((((((((((......)))))))))).......)).))..))).))))... ( -12.60) >DroSec_CAF1 63378 98 - 1 UACACACUACUAUAUUCCCUUCAUUUACUCUUCUUGCAUAUUUGGAAUUUCAAUUAACCUAAUUUAAUUGAAACUAUGUCUGCAGUCAAUUGUGUCUA .........................(((.....(((((.((.(((..((((((((((......))))))))))))).)).)))))......))).... ( -12.60) >DroSim_CAF1 62521 98 - 1 UACACACUACUAUAUUCCCUUCAUUUACUCUCCUUGCAUAUUUGGAAUUUCAAUUAACCUAAUUUAAUUGAAACUAUGUCUGCAGUCAAUUGUGUCUA .........................(((.....(((((.((.(((..((((((((((......))))))))))))).)).)))))......))).... ( -12.60) >DroEre_CAF1 61581 93 - 1 UUCGCACU-----AUUCGCACUAUUUACUGUCCUUGCAUAUUUGGAAUUUCAAUUAACCUAAUUUAAUUGAAACUAUGUCUGCAGUCAAUUGUGUCUA ........-----....((((.(((.(((((....(((((.......((((((((((......)))))))))).)))))..))))).))).))))... ( -16.90) >DroYak_CAF1 61292 93 - 1 UUCGCACU-----AUUCCCUUCAUUUACUGUCCUUGCGUAUUUGGAAUUUCAAUUAACCUAAUUAAAUUUAAACUAUGUCUGCAGUCAAUUGUGUCCA ...((((.-----.........(((.(((((....(((((.((.((((((.(((((...))))))))))).)).)))))..))))).))).))))... ( -10.60) >consensus UACGCACU__UAUAUUCCCUUCAUUUACUCUCCUUGCAUAUUUGGAAUUUCAAUUAACCUAAUUUAAUUGAAACUAUGUCUGCAGUCAAUUGUGUCUA .........................(((.....(((((.((.(((..((((((((((......))))))))))))).)).)))))......))).... (-10.86 = -11.10 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:08 2006