| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,329,221 – 8,329,324 |
| Length | 103 |
| Max. P | 0.909154 |
| Location | 8,329,221 – 8,329,324 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.56 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -7.92 |
| Energy contribution | -8.75 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.909154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8329221 103 + 20766785 AAUAACAACAACACGCCGCCUCGGC--UG-C---------CAUAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAUUGAGUAAACAAAGAGCGAAUGC ................(((.(((((--(.-.---------(((.(((((......)))))..))))))-).....(((((((((......))).))))))......)))))..... ( -20.50) >DroPse_CAF1 47459 115 + 1 AACGGCAAUGGCAA-CGGCAAUGGCAAUGGCAAUAAUAAGAAUAAUAAUAAACGAAUGCCGCUCAUGCACAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACACAGAGCAAAACC ...((((.((....-))((....))...............................))))((((.((........(((((((((......)).)))))))....))))))...... ( -20.50) >DroSim_CAF1 45299 103 + 1 AAUAACAACAACACGCCGCCUCGGC--UG-C---------CAUAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAUUGAGUAAACAAAGAGCGAAUGC ................(((.(((((--(.-.---------(((.(((((......)))))..))))))-).....(((((((((......))).))))))......)))))..... ( -20.50) >DroEre_CAF1 44585 103 + 1 AAUAACAAUAACACGCCGACUCGGC--GG-C---------CAUAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAUUGAGUAAACAAAGAGCGGAUGC ...............(((.(((...--((-(---------(((.(((((......)))))..))).))-).....(((((((((......))).))))))......)))))).... ( -24.40) >DroAna_CAF1 44081 88 + 1 AACA---------G------ACGGC--CA-U---------AACAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACAAAGACCAAAUAC ....---------.------..(((--((-(---------.(((((.........)))))..))).))-).....(((((((((......)).)))))))................ ( -16.90) >DroPer_CAF1 46005 115 + 1 AACGGCAACAGCAA-UGGCAAUGGCAAUGGCAAUAAUAAGAAUAAUAAUAAACGAAUGCCGCUCAUGCACAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACACAGAGCAAAACC ...(....).((..-(((((..(((...((((........................)))))))..))).......(((((((((......)).)))))))....))..))...... ( -20.36) >consensus AACAACAACAACAC_CCGCCACGGC__UG_C_________AAUAAUAAUAAACAAAUUGUGCAUGAGC_CAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACAAAGAGCAAAUGC .......................((...............................(((.((....)).)))...(((((((((......))).))))))........))...... ( -7.92 = -8.75 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:04 2006