| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,304,981 – 8,305,074 |
| Length | 93 |
| Max. P | 0.523685 |
| Location | 8,304,981 – 8,305,074 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 80.70 |
| Mean single sequence MFE | -11.87 |
| Consensus MFE | -7.08 |
| Energy contribution | -7.58 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8304981 93 + 20766785 AACACUUGAAAUAUUUAUACUUCAAUUUCGAUUUCAAUUAACGCGGCCAUUGGCCAUUGCACACAAAACAACCAAAAAAAAAAAACCGAAAAA .....(((((.((....)).)))))(((((..............((((...)))).(((....)))....................))))).. ( -10.20) >DroPse_CAF1 31572 75 + 1 -CCAUUUAAAAUAUUUAUGCUUCAAUUUCGAUUUCAAUUAACGCGACCAUCGGCGAGCCAUCGCGAAAAGA----------A------A-UCA -............................((((((........((.....))((((....)))).....))----------)------)-)). ( -12.80) >DroSec_CAF1 30411 75 + 1 AACACUUGAAAUAUUUAUGCUUCAAUUUCGAUUUCAAUUAACGCGGCCAUUGGCCAGUGCACACAAAACAA-----------------A-AAA ..((((((((((....((......))....))))))........((((...))))))))............-----------------.-... ( -12.00) >DroSim_CAF1 26074 76 + 1 AACACUUGAAAUAUUUAUGCUUCAAUUUCGAUUUCAAUUAACGCGGCCAUUGGCCAGUGCACACAAAACAA-----------------AAAAA ..((((((((((....((......))....))))))........((((...))))))))............-----------------..... ( -12.00) >DroEre_CAF1 26791 77 + 1 AACACUUGAAAUAUUUAUGCUUCAAUUUCGAUUUCAAUUAACGCGGCCACUGGCCAUUGAACGGAAAAAAA----------A------AAAAA .....(((((..........)))))(((((..((((((......((((...))))))))))))))).....----------.------..... ( -10.70) >DroYak_CAF1 27180 77 + 1 AACACUUGAAAUAUUUAUGCUUCAAUUUCGAUUUCAAUUAACGCGGCCAUCGGCCAUUGGCCACUGCACAA----------A------AAAAA .....(((((((....((......))....))))))).....(((((((........)))))...))....----------.------..... ( -13.50) >consensus AACACUUGAAAUAUUUAUGCUUCAAUUUCGAUUUCAAUUAACGCGGCCAUUGGCCAGUGCACACAAAACAA__________A______AAAAA .....(((((((....((......))....))))))).......((((...))))...................................... ( -7.08 = -7.58 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:01 2006