Locus 2257

Sequence ID 2R_DroMel_CAF1
Location 8,301,886 – 8,301,991
Length 105
Max. P 0.668879
window3710

overview

Window 0

Location 8,301,886 – 8,301,991
Length 105
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.56
Mean single sequence MFE -24.92
Consensus MFE -16.55
Energy contribution -17.80
Covariance contribution 1.25
Combinations/Pair 1.30
Mean z-score -1.57
Structure conservation index 0.66
SVM decision value 0.29
SVM RNA-class probability 0.668879
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8301886 105 - 20766785
AAUUCCCACAUAUACUUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUUUUCUCGGCUUU-G--UGGGCGAACGUAGCACA
..........................(((((((((((...(((...(((((....)))))....)))(((((.......)))))...-.--.))))))).)))).... ( -30.40)
>DroSec_CAF1 27419 105 - 1
AAUUCCACCAUAUACUUCUUAAAUUUCUAUUUGGCCCUUUGAGACUCGCAAGUAAUUGCGUCAACUCGUCGAAAUUUUGUCGGCUUU-G--UGGGCGAACGGAGCACA
..((((.............(((((....)))))((((...(((...(((((....)))))....)))(((((.......)))))...-.--.))))....)))).... ( -26.60)
>DroSim_CAF1 22953 105 - 1
AAUUCCCACAUAUACUUCUUAAAUUUCUAUUUUGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUUUUCUCGGCUUU-G--UGGGAGAAUGGAGCACA
..((((((((..............................(((...(((((....)))))....)))(((((.......)))))..)-)--))))))........... ( -28.30)
>DroEre_CAF1 23761 103 - 1
AAUUCCCCCAAAUA-UUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUU-UCUCAGCUUU-G--UGGUCGGGCGCAGCACA
..............-.................(((((...(((...(((((....)))))....)))((.((....-..)).))...-.--.....)))))....... ( -21.30)
>DroYak_CAF1 24153 103 - 1
AAUUCCCCUAUAUA-UUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGAGGAAAUU-CCCCAGCUUU-G--UGGUCGAGCGAAGCACA
..............-.....................(((((((...(((((....)))))....))))))).....-.....(((((-(--(......)))))))... ( -25.10)
>DroPer_CAF1 26306 87 - 1
--------UAUUUG-GCUUUAAAAUUCUAUUUCGCC-UUUGAG--UCACGGGUAAUUGCUUCAGCUCAAUGAAAUU-UCUCGGCUUUUGUGCGGGCGGAC--------
--------......-...............((((((-((((((--(...((((....))))..)))))).......-.....((......))))))))).-------- ( -17.80)
>consensus
AAUUCCCCCAUAUA_UUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUU_UCUCGGCUUU_G__UGGGCGAACGGAGCACA
..............................(((((((...(((...(((((....)))))....)))(((((.......)))))........)))))))......... (-16.55 = -17.80 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:00 2006