Locus 2253

Sequence ID 2R_DroMel_CAF1
Location 8,292,997 – 8,293,088
Length 91
Max. P 0.843071
window3705

overview

Window 5

Location 8,292,997 – 8,293,088
Length 91
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -33.36
Consensus MFE -22.86
Energy contribution -23.78
Covariance contribution 0.92
Combinations/Pair 1.09
Mean z-score -2.00
Structure conservation index 0.69
SVM decision value 0.76
SVM RNA-class probability 0.843071
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8292997 91 - 20766785
UGCAGCGGCUGGUG---------UUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCGUGGUGUGGCAUG
.((((((((....)---------))))))).((((((..(((.(((((.((...((..((.......))..)).....))...))))).))).)))))). ( -35.70)
>DroSim_CAF1 14069 100 - 1
UGCAGCGGCUGGUGUUGCUGGUGUUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCACUGGCGUGGUGUGGCAUG
..(((((((....)))))))((((..(.((..(((((.(.....((((((....((..((.......))..)).))))))..))))))..)))..)))). ( -40.30)
>DroEre_CAF1 14835 83 - 1
UGCAGCGGCUGGUG---------CU--------GCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCAUGGUGUGGCAUG
....((.(((.(((---------((--------((....))...((((((....((..((.......))..)).))))))....))))).).)).))... ( -26.10)
>DroYak_CAF1 15021 91 - 1
UGCAGCGGCUGGUG---------UUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCGUGGUGUGGCAUG
.((((((((....)---------))))))).((((((..(((.(((((.((...((..((.......))..)).....))...))))).))).)))))). ( -35.70)
>DroAna_CAF1 15032 83 - 1
UAUU------------GCUG---UUG-UGCCUCGCCAGGGCUUCGCUACGUGUUGUUUCAUCAACUUC-GGACUUGUGGCCUAUGGCAUGGUGUGGCAUG
....------------..((---(..-((((..(((((((((.((...((.((((......))))..)-)....)).))))).))))..))))..))).. ( -29.00)
>consensus
UGCAGCGGCUGGUG_________UUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCGUGGUGUGGCAUG
...........................((((..((((..(((..((((((....((((((.......)))))).))))))....))).))))..)))).. (-22.86 = -23.78 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:55 2006