Locus 2251

Sequence ID 2R_DroMel_CAF1
Location 8,290,278 – 8,290,394
Length 116
Max. P 0.993122
window3703

overview

Window 3

Location 8,290,278 – 8,290,394
Length 116
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 68.11
Mean single sequence MFE -26.23
Consensus MFE -14.31
Energy contribution -15.06
Covariance contribution 0.75
Combinations/Pair 1.36
Mean z-score -2.18
Structure conservation index 0.55
SVM decision value 2.37
SVM RNA-class probability 0.993122
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8290278 116 - 20766785
AAUGUUGCAGUUAAUAAGUGUGGCUUUUAAUAAAUUUAAGGGGCAAUGAUUUCUGCUACAUUGGCUUUUAUAAAAUCUAGUUAUAAAAUCAC---GUAGUGCAACAUAAAAAGGAGCUA
.(((((((............((.(((((((.....))))))).)).........(((((..(((.((((((((.......))))))))))).---))))))))))))............ ( -24.30)
>DroSec_CAF1 15843 88 - 1
AAUGUUGCAGUUAAUAAUUGUGGCUUU---------UAAGGGGCAAUGAUUUCUGCUACAUUGGCUUUUAUAAAAUCUAG-------AUUAC---U---UGCAGC---------AGAUA
..((((((((.((((......(..(((---------((((((.(((((..........))))).)))))).)))..)...-------)))).---)---))))))---------).... ( -20.80)
>DroEre_CAF1 12122 102 - 1
AAUGCUGCAGUUAAUAAUUGUGGCUUU---------CGGGGGGCAGUGGUUUCUAUUACAUGGGCUUUCAUAAAAUCUAGAUUUUUUGCCACAAUGCAGUGCAGCAUUAAA--------
(((((((((.(.....((((((((...---------..(..(((.(((..........)))..)))..)..(((((....)))))..))))))))..).)))))))))...-------- ( -33.60)
>DroYak_CAF1 12197 103 - 1
AAUGUUGCAGUUAAUAAUUGUGGCUUU---------UAAGGGGCAGGGAUUUCACUUACAUUGGGUGUUAUAAAGUCUAGAUUUUUUGCCACAUAGCAUUGCAAUGUUGAG-----C--
(((((((((((.......((((((...---------.((.((((....((..(((((.....)))))..))...))))...))....))))))....)))))))))))...-----.-- ( -26.20)
>consensus
AAUGUUGCAGUUAAUAAUUGUGGCUUU_________UAAGGGGCAAUGAUUUCUGCUACAUUGGCUUUUAUAAAAUCUAGAUUUUUUACCAC___GCAGUGCAACAUUAAA_____C__
.((((((((.........((((((............((((((.(((((..........))))).)))))).................))))))......))))))))............ (-14.31 = -15.06 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:53 2006