Locus 2250

Sequence ID 2R_DroMel_CAF1
Location 8,289,570 – 8,289,664
Length 94
Max. P 0.971879
window3702

overview

Window 2

Location 8,289,570 – 8,289,664
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.33
Mean single sequence MFE -26.82
Consensus MFE -10.32
Energy contribution -10.97
Covariance contribution 0.64
Combinations/Pair 1.22
Mean z-score -2.62
Structure conservation index 0.39
SVM decision value 1.68
SVM RNA-class probability 0.971879
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8289570 94 - 20766785
---------AAAAAGGGAA-GGCGGCAUGUAAAAG-CUGGUAGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU---UUC----GAGAAUUUAUGCAAACUUUC-G-------U
---------......((((-(..(((.((((..((-((((((((.(......))))))))))))))))))((((((((((---...----.))))))))))....)))))-.-------. ( -29.40)
>DroPse_CAF1 16613 95 - 1
---------CAAAAAGUGA-GGCAG----AACAAA-CU---GAAAGUGAAAACUUUUCUGGCUUACAGCUCGUAAAUUCC---UUG----GAAAAUGUAUGCAAACUUUUCGGUAACGGG
---------......((((-(.(((----((....-..---..((((....))))))))).)))))..(((((.....((---...----(((((.((......)))))))))..))))) ( -20.40)
>DroSec_CAF1 15192 94 - 1
---------AAAAAGGGCA-GGCGGCAUGUAAAAG-CUGGUAGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU---UUC----GAGAAUUUAUGCAAACUUUC-G-------U
---------..((((.(((-.(((((.((((..((-((((((((.(......))))))))))))))))).)))(((((((---...----.))))))).)))...)))).-.-------. ( -28.30)
>DroEre_CAF1 11441 93 - 1
---------AAAAAGGAG--AGCGUCAAGUGAAAG-CUGGUGGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU---UUC----GGGAAUUUAUGCAAACUUUC-G-------U
---------..((((..(--(((.((....))(((-((((..((.(......)))..)))))))...))))(((((((((---...----.))))))))).....)))).-.-------. ( -26.30)
>DroYak_CAF1 11496 95 - 1
---------AAAAAGGAGAGAGCGCCAAGUGGAAG-CUGCUAGAAGGCUAAACUUUGCUAGCUUACGGCUCGUAAAUUCU---UUC----GAGAAUUUAUGCAAACUUUC-G-------U
---------......(((((...(((.(((....)-))(((((((((.....)))).)))))....))).((((((((((---...----.))))))))))....)))))-.-------. ( -26.60)
>DroAna_CAF1 11251 108 - 1
AGAAAAAAUAAAAAGGGAA-GUG---AGGAGAAAGUCUGGAGAAAGUGAAAACUUUGCUAGCUUACAGCUCGUAAAUUCCCUUUUUGUGAGGAAAUUUAUGCAAACUUUC-G-------U
.......((((((((((((-...---(.(((.(((.((((..(((((....))))).)))))))....))).)...))))))))))))..((((.(((....))).))))-.-------. ( -29.90)
>consensus
_________AAAAAGGGGA_GGCGGCAAGUAAAAG_CUGGUAGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU___UUC____GAGAAUUUAUGCAAACUUUC_G_______U
............((((................(((.((((((((.(......))))))))))))...((..(((((((((...........)))))))))))...))))........... (-10.32 = -10.97 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:52 2006