| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,287,426 – 8,287,523 |
| Length | 97 |
| Max. P | 0.857951 |
| Location | 8,287,426 – 8,287,523 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.90 |
| Mean single sequence MFE | -31.08 |
| Consensus MFE | -22.68 |
| Energy contribution | -23.52 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.857951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8287426 97 + 20766785 A-----------UCUGCAAUAU-UGCCAGCUUGCGCACACUGAUUUCAACUGAUGAAGUUGGCGUGGCAUGUGCGGUCGCCCCGCACCCCCCGGCGAACACUUCAUCGC----------- .-----------.........(-((((....(((.(((.(..((((((.....))))))..).)))))).((((((.....)))))).....)))))............----------- ( -32.60) >DroSec_CAF1 12918 104 + 1 A-----------UCUGCAAUAU-UGCCAGCUUGCACACACUGAUUUCAACUGAUGAAGUUGGCGUGGCAUGUGCGGUCGCCCCGCACCC-CCGGCGAACACUUCACCGCCUCCCACC--- .-----------..........-.((((((((.((((...((....))..)).))))))))))((((...((((((.....))))))..-..((((..........))))..)))).--- ( -32.70) >DroSim_CAF1 8786 106 + 1 A-----------UCUGCAAUAU-UGCCAGCUUGCACACACUGAUUUCAACUGAUGAAGUUGGCGUGGCAUGUGCGGUCGCCCCGCACCCCCCGACGAACACUUCACCGCCCACCGCCC-- .-----------...((.....-.((((((((.((((...((....))..)).))))))))))(((((..((((((.....))))))........((.....))...).)))).))..-- ( -28.70) >DroEre_CAF1 9248 95 + 1 A-----------UCUGCAAUAU-CGCCAACUUGCACACACUGAUUUCAACUGAUGAAGUUGGCGUGGCAUGUGCGGCCUCCCCGCACC--CCGGCGAACACCUCCCCGC----------- .-----------.........(-((((....(((.(((.(..((((((.....))))))..).)))))).((((((.....)))))).--..)))))............----------- ( -34.40) >DroYak_CAF1 9287 106 + 1 AUCUGGUAACAAUCUGCAAUAU-UGCCAGCUCGCACACACUGAUUUCAACUGAUGAAGUUGGCGUGGCAUGUGCGGUCUCCCCGCACC--CCGGCGAACACUUCCCCGC----------- ..(((((((............)-))))))...((.(((.(..((((((.....))))))..).)))))..((((((.....)))))).--.(((.((.....)).))).----------- ( -33.60) >DroAna_CAF1 8969 104 + 1 A-----------CGUGCAAUAUGUUGCAGCUUGUCCACACUGAUUCCGACUGAUGAAGUUGGCGUUGCAUGUGCGGUUACCUCACCUC--CCUGC---CACUCCCUGGCUAUCCUCACAC (-----------((((((((......(((..((....)))))...((((((.....)))))).)))))))))..(((......)))..--...((---((.....))))........... ( -24.50) >consensus A___________UCUGCAAUAU_UGCCAGCUUGCACACACUGAUUUCAACUGAUGAAGUUGGCGUGGCAUGUGCGGUCGCCCCGCACC__CCGGCGAACACUUCACCGC___________ .......................((((.....((.(((.(..((((((.....))))))..).)))))..((((((.....)))))).....))))........................ (-22.68 = -23.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:49 2006