Locus 2244

Sequence ID 2R_DroMel_CAF1
Location 8,284,663 – 8,284,766
Length 103
Max. P 0.725943
window3693

overview

Window 3

Location 8,284,663 – 8,284,766
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.06
Mean single sequence MFE -32.80
Consensus MFE -21.15
Energy contribution -21.91
Covariance contribution 0.76
Combinations/Pair 1.10
Mean z-score -1.93
Structure conservation index 0.64
SVM decision value 0.41
SVM RNA-class probability 0.725943
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8284663 103 - 20766785
UAUUGCCCC-UGGGGUUGAUCCU--------GAUCCCCA--------GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAAUGCAUAUAAAGCGAAGCAUAUAUUUGUUUCAGCAACUGC
..(((((((-(((((((......--------)).)))))--------)..........((((((....))))))))))))...........((((((((......)))))).))...... ( -36.70)
>DroSec_CAF1 7644 103 - 1
UAUUGCCCC-UGGGGUUGAUCCU--------GAUCCCCA--------GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAACGCAUAUAAAGCGAAACAUAUAUUUGUUGCAGCAACCUC
...((((((-(((((((......--------)).)))))--------).....)))))((((((....))))))((((....)).......((..((((......))))...))..)).. ( -34.10)
>DroSim_CAF1 5958 103 - 1
UAUUGCCCC-UGGGGUUGAUCCU--------GAUCCCCA--------GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAACGCAUAUAAAGCGAAACAUAUAUUUGUUGCAACAACUGC
..(((((((-(((((((......--------)).)))))--------)..........((((((....)))))))))))).(((.......))).((((......))))(((.....))) ( -33.40)
>DroEre_CAF1 6600 99 - 1
UAUUGACCCUUGGGGUUGAU------CCUCCGAUCCCCA--------GAUCCUG-ACAGAUUGCAGCUGCAAUCGGGGAAACGCAUA-AAAGUCAACCGUAUAUU----UCAGCGAC-GC
........((.(((((((..------....))))))).)--------)....((-((.((((((....))))))(.(....).)...-...))))..(((.....----...)))..-.. ( -27.80)
>DroYak_CAF1 6708 119 - 1
UAUUGCCCCUUGGGGUUGAUCCUGAUCCUCCGAUCCCCAGAUCGCCAGAUCCUG-ACAGAUUGCAGCUGCAAUCGGGAAAACGCAUACAAAGCUAGCCAUAUAUUUGUUUUAGCGACUGC
....((((....))))...((((((((...(((((....)))))...))))...-...((((((....))))))))))...(((..(((((..((....))..)))))....)))..... ( -32.00)
>consensus
UAUUGCCCC_UGGGGUUGAUCCU________GAUCCCCA________GAUCCUGGGCAGAUUGCAGCUGCAAUCGGGCAAACGCAUAUAAAGCGAAACAUAUAUUUGUUUCAGCAACUGC
..((((((..(((((...................)))))...................((((((....)))))))))))).(((.......))).......................... (-21.15 = -21.91 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:44 2006