| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,283,403 – 8,283,507 |
| Length | 104 |
| Max. P | 0.940194 |
| Location | 8,283,403 – 8,283,507 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -22.11 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8283403 104 - 20766785 UCCACUCCGCUCCGCAGCGGAGCAAUGCGUGACCAAUUCGAAAGG----GGUCGCAAAUACUG-GCCAACUUC-CAUGCAA-ACUGCUGCAGACACUGCACCA--------AAUGCACU .((((((((((....)))))))......((((((...((....))----))))))......))-)........-..((((.-..((.(((((...))))).))--------..)))).. ( -32.90) >DroSec_CAF1 6426 104 - 1 UGCACUCCGCGCCGCAGCGGAGCAAUGCGUGACCAAUCCGAAAGG----GGUCGCAAAUACUG-GCCAACUUC-CAUGCAA-ACUGCUGCAGACACUGCACCA--------AAUGCACU .(((((((((......))))))...)))((((((...((....))----))))))......((-(.......)-))((((.-..((.(((((...))))).))--------..)))).. ( -36.80) >DroEre_CAF1 5281 96 - 1 UCCACUCCGCUCCGCAGCGGAGCAAUGCGUGACCAAUCCGAAAGG----GGUCGCA-AUACUG-GCCAACUUC-CAUGC--------GGCAGACACUGCACCA--------AAUGCACU ....(((((((....)))))))...(((((((((...((....))----)))))).-......-.........-..((.--------.((((...))))..))--------...))).. ( -32.70) >DroYak_CAF1 5407 105 - 1 UCCACUGCGCUCCGCAGCGGAGCAAUGCGUGACCAAUCCGAAAGG----GGUCGCAAAUACUG-GCCAACUUC-CAUGCAAAACUGCUGCAGACACUGCACCA--------AGUGCACU ....((((((((((...))))))..(((((((((...((....))----))))))......((-(.......)-)).)))........))))....(((((..--------.))))).. ( -37.30) >DroAna_CAF1 5246 107 - 1 UUAUUUUCUCGCAGCACUGGAGCAAUGCGUUACCAAUCCAAAAGG----GGUCGCAAAUACUGGGCCAACUUCCCAUGUGAACCUGCCGCAGACACUGCAGGA--------UAUGCACU ..........(((....((((((.....))).)))((((....((----(.(((((.....((((.......))))))))).)))...((((...)))).)))--------).)))... ( -26.90) >DroPer_CAF1 9475 107 - 1 -----UCCGGUCCCAAACGGAGCAGUGCGUGACCAAUGUGGAAGGGCCGGGCCACAUUUGCGG-ACCAACUCC-CAGGGAA-----CUGCAACAACUGCAAAAAGCCAGGGAAUGCACU -----((((........))))..(((((((..((....(((.....)))(((....(((((((-(.....)))-(((....-----)))........)))))..))).))..))))))) ( -33.70) >consensus UCCACUCCGCUCCGCAGCGGAGCAAUGCGUGACCAAUCCGAAAGG____GGUCGCAAAUACUG_GCCAACUUC_CAUGCAA_ACUGCUGCAGACACUGCACCA________AAUGCACU ....((((((......))))))...(((((((((...((....))....)))))).................................((((...))))...............))).. (-22.11 = -23.00 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:43 2006