Locus 2237

Sequence ID 2R_DroMel_CAF1
Location 8,271,662 – 8,271,761
Length 99
Max. P 0.618341
window3684

overview

Window 4

Location 8,271,662 – 8,271,761
Length 99
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -26.56
Consensus MFE -15.16
Energy contribution -16.60
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.57
SVM decision value 0.17
SVM RNA-class probability 0.618341
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8271662 99 + 20766785
UCCUAUACAUUUUUAGCAAUGGCUA-------------AUUUAAAUUUUCCCGCCACCAUUGGUGGG-AUUGGAACUGGUGGUCAGUUCUGGAACGUGGUGAAAA-AAGGAGAA
((((........(((((....))))-------------)......(((((((((((((...))))(.-.(..((((((.....))))))..)..))))).)))))-.))))... ( -30.60)
>DroSec_CAF1 58834 99 + 1
ACCUAAAUC-UUUUAGCAAUGGCUA-------------AUUUAAAUUUUCCCGCCACCAUUGGUGGG-AUUGGAACUAGUGGUCAGUUCUGAAACGUGGUGAAAAUAAGGAGAA
.(((.....-..(((((....))))-------------).....((((((((((((((...))))(.-.(..(((((.......)))))..)..))))).)))))).))).... ( -27.20)
>DroSim_CAF1 61105 99 + 1
ACCUAAACC-UUUUAGCAAUGGCUA-------------AUUUAAAUUUUCCCGCCAUCAUUGGUGGG-AUUGGAACUAAUGGUCAGUUCUGGAACGUGGUGAAAAUAAGGAGAA
.(((..(((-..(((((....))))-------------).........((((((((....)))))))-)(..(((((.......)))))..).....))).......))).... ( -27.50)
>DroEre_CAF1 58764 113 + 1
ACCUAAAAAU-GUUACCAAUGCCUAAAUGCCUAGACCCAUUUAAAUUUUACCGCCAACAUUGGUGGGAAAUGGAACAAGUGGUCAGAUCUGGAACGUGGUGAAAAAGAGGAGAA
.(((......-.((((((...((....((((.....((((((........((((((....)))))).)))))).......)).)).....))....)))))).....))).... ( -28.00)
>DroYak_CAF1 61004 105 + 1
ACCUAAAAAUUCUUAGCAAUGUUAAAAUA--------CAUUUAAAAUUUCCCGCCAACAUUGGUGGAAAUUGGAACGAGUGG-CAAUUCUGAAACGUGGUGAAAAAGAGGGGAA
.(((.....(((((.((.(((((......--------.......(((((((.((((....))))))))))).....((((..-..))))...))))).))....)))))))).. ( -19.50)
>consensus
ACCUAAAAAUUUUUAGCAAUGGCUA_____________AUUUAAAUUUUCCCGCCAACAUUGGUGGG_AUUGGAACUAGUGGUCAGUUCUGGAACGUGGUGAAAAAAAGGAGAA
.(((......(((((.((................................((((((....))))))...((((((((.......))))))))....)).)))))...))).... (-15.16 = -16.60 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:35 2006