Locus 2223

Sequence ID 2R_DroMel_CAF1
Location 8,205,118 – 8,205,237
Length 119
Max. P 0.735698
window3662

overview

Window 2

Location 8,205,118 – 8,205,237
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 76.30
Mean single sequence MFE -39.89
Consensus MFE -16.19
Energy contribution -15.87
Covariance contribution -0.32
Combinations/Pair 1.50
Mean z-score -2.24
Structure conservation index 0.41
SVM decision value 0.44
SVM RNA-class probability 0.735698
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8205118 119 + 20766785
CUUAUCCAGAGCCGCCUCUAGGUUAAAAAGUUUCCUCAGCAACAGAUUGCUGGAAACAUCACAAGGUUCACUGGUUAGCCACUGAGGUGACUUCUUCUCUAUUUGCUCUAGGAGACUAA
....((((((((((((((..((((((..(((..(((((((((....))))))((....))...)))...)))..))))))...))))))...............))))).)))...... ( -35.46)
>DroGri_CAF1 403 119 + 1
CUUCUGCAGUGCAGCAUCCAAGUUGAACAGUUGCCUCAACAGCAGAUUGCUGGACACAUCGCAGGGUUCACUUGCAAGCAGAUCGGGCGCCUUCUCCAGGAUGCGCACCAGUAAACUAU
..(((((.((.(((((((...(((((.........)))))....)).))))).)).....(((((.....)))))..)))))..((((((.(((....))).)))).)).......... ( -39.90)
>DroSec_CAF1 419 119 + 1
CUUAUCCAGAGCCGCCUCUAGGUUGAAUAGUUUCCUCAGCAACAGAUUGCUGGCAACAUCACAAGGUUCACUGGCUAGCCACUGAGGUGACUUUUUCUCGAUUUGCUUUAGGAGACGAA
.(((.((((((....)))).)).)))...(((((((((((((....))))))((((.(((.......(((.(((....))).)))(....)........)))))))...)))))))... ( -32.80)
>DroEre_CAF1 418 119 + 1
CUUAUCUAGAGCCGCCUCUAGGUUGAAUAGUUUUCUGAGCAAGAGAUUGCUGGAAACAUCACAAGGCUCACUGGCUAGCCACUGAGGUGACUUCCUCUUUAUAUGCUCGAGGAGACUAA
...((((((((....))))))))....((((((((((((((((((.....((....))((((....((((.(((....))).))))))))....)))).....))))).))))))))). ( -40.10)
>DroYak_CAF1 412 119 + 1
CUUAUCGAGAGCCGCCUCUAGGUUGAAUAGUUUCCUCAGCAAGAGAUUGCUGGAAACAUCGCAAGGUUCACUGGCUAGCCACUGAGGUGACUUCUUUGCUAUAUGCUCCAGGAGUUUAG
............((((((..(((((....((((((..(((((....)))))))))))...((.((.....)).)))))))...))))))((((((..((.....))...)))))).... ( -36.40)
>DroMoj_CAF1 406 119 + 1
CUUCUGCAGAGCAGCAUCCAAAUUGAAGAGUUGUCGCAGCAUCAGAUUGCUGGAGACGUCGCAGGGCUCGCUGGAGAGCAGCUCUGGUGCCCUCUCCAGCAAUCGCUGCAGCAACUGGU
(((((((......)))........))))((((((.(((((....((((((((((((.(.(((((((((.(((....))))))))).))).).))))))))))))))))).))))))... ( -54.70)
>consensus
CUUAUCCAGAGCCGCCUCUAGGUUGAAUAGUUUCCUCAGCAACAGAUUGCUGGAAACAUCACAAGGUUCACUGGCUAGCCACUGAGGUGACUUCUUCUCUAUUUGCUCCAGGAGACUAA
....(((.((((.................(((...(((((((....))))))).))).((((....((((.(((....))).))))))))..............))))..)))...... (-16.19 = -15.87 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:14 2006