Locus 2218

Sequence ID 2R_DroMel_CAF1
Location 8,168,776 – 8,168,878
Length 102
Max. P 0.700340
window3654

overview

Window 4

Location 8,168,776 – 8,168,878
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 91.64
Mean single sequence MFE -28.48
Consensus MFE -21.96
Energy contribution -21.44
Covariance contribution -0.52
Combinations/Pair 1.14
Mean z-score -1.70
Structure conservation index 0.77
SVM decision value 0.35
SVM RNA-class probability 0.700340
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8168776 102 - 20766785
UCGCUCUGUGGAAUGCUCCAAUCGUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGGGCGUACUUGCAAAUAUGCUUUAAAUAUACAUUGGCGAUUU-UUUAUA
(((((..(((..(((((((((.((((((.((((......)))).))))))))).))))))....(((....)))..........))).)))))...-...... ( -32.60)
>DroSec_CAF1 1412 103 - 1
UCGCUCUGUGGAAUGCUCCAAUCCUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGGACGUAUUUGCAAAUAUACUUUAAAUAUACAUUGGCGAUUUUUUUAUA
(((((..(((.((((((((((((((....)))).........))))))))))......((((........))))..........))).))))).......... ( -24.40)
>DroSim_CAF1 1414 103 - 1
UCGCUCUGUGGAAUGCUCCAAUCCUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGAGCGUACUUGCAAAUAUGCUUUAAAUAUACAUUGGCGAUUUUUUUAUA
(((((..(((.((((((((((((((....)))).........)))))))))).((((((((........)))))))).......))).))))).......... ( -29.70)
>DroEre_CAF1 1437 103 - 1
UCGCUCUGUGGAAUGCCCCAAUCGUUCAUGGGGCCACAAUCCUUGGAGCGUCGAGGGCUUACUUGGAAUUGUACUCUAAAUAUACAUUGGCGAUUUUUUUAUA
..((((((.(((..((((((........)))))).....))).))))))(((((..(..((.(((((.......))))).))..).)))))............ ( -29.30)
>DroYak_CAF1 1418 102 - 1
UCGCUCUGUGGAAUGCCCCAAUCGUUCCUGGGGCCACAAUCCUUGGACCGUCGAGGACUUACUUGGAAAUGUACUUUAAAAAAACAUUGGCGAUUU-UUUAUA
(((((..(((....((((((........)))))).....(((((((....)))))))...........................))).)))))...-...... ( -26.40)
>consensus
UCGCUCUGUGGAAUGCUCCAAUCGUUCCUGGGGCCACAAUCCUUGGAGCGUUGAGGGCGUACUUGCAAAUAUACUUUAAAUAUACAUUGGCGAUUUUUUUAUA
(((((..(((....((((((........)))))).....(((((((....)))))))...........................))).))))).......... (-21.96 = -21.44 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:06 2006