Locus 2214

Sequence ID 2R_DroMel_CAF1
Location 8,152,507 – 8,152,614
Length 107
Max. P 0.855724
window3648

overview

Window 8

Location 8,152,507 – 8,152,614
Length 107
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.54
Mean single sequence MFE -36.35
Consensus MFE -22.49
Energy contribution -23.38
Covariance contribution 0.89
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.62
SVM decision value 0.81
SVM RNA-class probability 0.855724
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8152507 107 - 20766785
UCUGCGCGUGCUAUCGCUAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA-CAAAUCGAGAAUACGAACUAUCGAUAGUUUUGAUG-G----------
..(((((((..((((((........)))))).)))))))..(((.(((((.((.......)).))))).))-)...(((......))).(((((((.....))))))-)---------- ( -38.00)
>DroSec_CAF1 4439 107 - 1
UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGGGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA-CAGUUCGAGAACACGAACUAUCGAUAGUUUUGAUA-G----------
..(((.(((..(((((((......))))))).))).)))..(((.(((((.((.......)).))))).))-).(((((......)))))((((((.....))))))-.---------- ( -36.50)
>DroSim_CAF1 2969 116 - 1
UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA-CAGUUCGAGAGCACGAAAUAUCGAUAGUUUUGAUA-GGCUA-GGUUA
..(((((((..(((((((......))))))).)))))))((.((((((((.((.((....)).)).))...-...((((......)))).((((((.....))))))-)))))-).)). ( -38.40)
>DroEre_CAF1 2885 107 - 1
ACUGCGCGUGCUAUCGGAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCGGCGGCACCAUAAGUGGUGCCAAA-UAGAUCGCGAAUGUGGACUAUCGAUAGUUUUGAUA-G----------
.(..((((((..(((....))))))))........(((((.((.....))(((((((....)))))))...-....)))))...)..).(((((((.....))))))-)---------- ( -37.90)
>DroYak_CAF1 2888 107 - 1
UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGAAAGUGGCGGCAAA-UAGCUCGAGAAAAUCAACUAUCGAUAGUUUUAAUA-G----------
(((((((((..(((((((......))))))).))))))((.((((..(((.((.((....)).)).)))..-)))))).))).....(((((....)))))......-.---------- ( -37.50)
>DroAna_CAF1 2683 111 - 1
ACUGCGCGUGCUAUCGGCAGCAUAAACGAUUAACGCGUGAAGUUGGCUGCAGUACUUUUGGUGGCGGGAAAGCAGCUGGUG--------UUAUCGAAACUUUAAAUGUGGCUGUGCUUA
...((((((...((((..........))))..)))))).((((((((..((....(((((((((((((.......))..))--------))))))))).......))..)))).)))). ( -29.80)
>consensus
UCUGCGCGUGCUAUCGCAAGAUUAUGCGAUGAAUGCGCGAAGUUGGCUGCGGCAGCGACGGUGGCGGCAAA_CAGAUCGAGAACACGAACUAUCGAUAGUUUUGAUA_G__________
..(((((((..((((((........)))))).)))))))......(((((.((.......)).)))))......................((((((.....))))))............ (-22.49 = -23.38 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:00 2006