Locus 2208

Sequence ID 2R_DroMel_CAF1
Location 8,135,482 – 8,135,580
Length 98
Max. P 0.670751
window3640

overview

Window 0

Location 8,135,482 – 8,135,580
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.64
Mean single sequence MFE -18.12
Consensus MFE -13.78
Energy contribution -13.78
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.57
Structure conservation index 0.76
SVM decision value 0.29
SVM RNA-class probability 0.670751
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8135482 98 - 20766785
----------------------AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGGUACCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACAAAA
----------------------.....(((....(((....((((((((...((((((...)))))).............(((.....))).....))))))))..)))..)))...... ( -16.30)
>DroSec_CAF1 21936 98 - 1
----------------------AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACACCA
----------------------.....(((....(((....((((((((...((((((...)))))).............(((.....))).....))))))))..)))..)))...... ( -16.30)
>DroSim_CAF1 12661 98 - 1
----------------------AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACACCA
----------------------.....(((....(((....((((((((...((((((...)))))).............(((.....))).....))))))))..)))..)))...... ( -16.30)
>DroEre_CAF1 12783 120 - 1
UUGAAUCCGAAAUAAACUGGCGAUUUAUUCAAAUCUAACCAAAAACUAUAUCGGUUGGUUCCCAAUCAUUUCUGGCUACUGUCUUUUUGACUUUCAAGGGUUUUCCUUUUCGAAACGCUA
........(((((....(((.(((((....)))))...)))...........((((((...)))))))))))((((....(((.....)))(((((((((....)))))..)))).)))) ( -20.30)
>DroYak_CAF1 22247 119 - 1
UUAAAUCCGAAAUA-GCUGGCCAUUUGUUCAAAACUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCAACUGUCUUUUUGACUCCCAAGGGGUUUCCUUUUCGAAACGCUU
.......(((((..-((..((((((((............)))).........((((((...)))))).....))))....))..))))).......(((.(((((......))))).))) ( -21.40)
>consensus
______________________AUUUAUUCAAAUCUAACCAAAAACUCUAUCGAUUGGAUCCCAAUCAUUUCUGGCCACUGUCUUUUUGACUUUCAAGAGUUUUCCUAGUCGAAACACCA
.........................................((((((((...((((((...)))))).............(((.....))).....))))))))................ (-13.78 = -13.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:52 2006