Locus 2207

Sequence ID 2R_DroMel_CAF1
Location 8,134,964 – 8,135,084
Length 120
Max. P 0.731573
window3639

overview

Window 9

Location 8,134,964 – 8,135,084
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.28
Mean single sequence MFE -26.78
Consensus MFE -24.96
Energy contribution -25.02
Covariance contribution 0.06
Combinations/Pair 1.19
Mean z-score -1.12
Structure conservation index 0.93
SVM decision value 0.43
SVM RNA-class probability 0.731573
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8134964 120 + 20766785
GUCUAGAUACGGAAAAUAUAAGGUUUGUGUUUGCAGCUGUUAAGGACACAAUUCUGCAAUCGAACCUUAAGGAAUAUAAUUUGGUCUAAACUGGAUUUGGAUCGAAAAACUAUUUUUGUG
.......((((((((...(((((((((...((((((.(((.......)))...)))))).)))))))))..........(((((((((((.....)))))))))))......)))))))) ( -30.60)
>DroVir_CAF1 30536 120 + 1
CUUUAGAUACUGAAAAUAUAAGGUUUGUGUUUGCAGCUGUAAAGGAUACAAUUCUGCAAUCCAAUCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGAAAACUAUUUUUGUG
.......(((.(((((((......((((((((((((.((((.....))))...))))))(((........)))))))))(((((((((((.....)))))))))))....)))))))))) ( -25.10)
>DroWil_CAF1 32046 120 + 1
UUCUAGAUACUGAAAACAUAAGGUUUGUGUUUGCUGCUGUAAAGGACACAAUUCUGCAAUCAAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUAGAUCGGAUAACUAUUUUUGUG
..................(((((((((...((((...(((.......))).....)))).)))))))))(((((((..((((((((((((.....))))))))))))...)))))))... ( -25.90)
>DroMoj_CAF1 13675 120 + 1
CUAUAGAUACUGAAAAUAUAAGGUUUGUGUUUGCAGCUGUAAAGGACACGAUUCUGCAAUCCAAUCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGAAAACUAUUUUUGUG
.......(((.(((((((......((((((((((((..((...(....).)).))))))(((........)))))))))(((((((((((.....)))))))))))....)))))))))) ( -23.10)
>DroAna_CAF1 11206 120 + 1
GUUUAGAUACGGAAAAUAUUAGGUUUGUGUUUGCAGCUGUUAAGGACACGAUCCUGCAAUCGAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGCAAACUAUUUUUGUG
.......((((((((.....(((((((...((((((.((((...)))).....)))))).))))))).............((((((((((.....)))))))))).......)))))))) ( -25.90)
>DroPer_CAF1 14549 120 + 1
GUUUAGAUACUGAAAACAUAAGGUUUGUGUUUGCAGCUGUUAAGGACACCAUUCUGCAAUCGAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGACCAGUAAACUAUUUUUGUG
(((((...........(.(((((((((...((((((.((((...)))).....)))))).))))))))).).........((((((((((.....))))))))))))))).......... ( -30.10)
>consensus
GUUUAGAUACUGAAAAUAUAAGGUUUGUGUUUGCAGCUGUAAAGGACACAAUUCUGCAAUCGAACCUUAAGGAAUACAAUUUGGUCUAAACUGGAUUUGGAUCAGAAAACUAUUUUUGUG
..................(((((((((...((((((.(((.......)))...)))))).)))))))))(((((((...(((((((((((.....)))))))))))....)))))))... (-24.96 = -25.02 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:51 2006