Locus 2206

Sequence ID 2R_DroMel_CAF1
Location 8,133,347 – 8,133,465
Length 118
Max. P 0.768287
window3638

overview

Window 8

Location 8,133,347 – 8,133,465
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.38
Mean single sequence MFE -34.44
Consensus MFE -24.20
Energy contribution -23.78
Covariance contribution -0.41
Combinations/Pair 1.21
Mean z-score -1.62
Structure conservation index 0.70
SVM decision value 0.52
SVM RNA-class probability 0.768287
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8133347 118 + 20766785
AUUUA--UCUAAUUUAGCUACUUGAGCGAUCUAGCUCGAAUUGAACAGGCUGAUUACUUGCCAACCGAGCAGGAUAUUCUGCGUGCUCGAGUGCCGACAACUGGCAUUCUUGAGUAUCCA
.....--.........(((..((((((......))))))........(((.........))).....))).((((((((.(....)..((((((((.....))))))))..)))))))). ( -35.40)
>DroPse_CAF1 12553 120 + 1
AUUCCUUCCUUACUUAGCUACUUAAGCGACAUAGAUCGCAUUUCACAGCCCGACUACCUGGCCACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACCACUGGCAUACUAGAGUAUCCA
............(((((........((((......))))........(((.(.....).)))..)))))..((((((((((.......((((((((.....)))))))))))))))))). ( -33.81)
>DroEre_CAF1 10630 118 + 1
AUUUA--UCUAAUUUAGCUACUUGAGCGAUCUGGCUCGAAUUGAACAGGCUGAUUACUUGCCAACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACAACUGGCAUUCUUGAGUAUCCA
.....--.........(((..((((((......))))))........(((.........))).....))).((((((((.(((....)))((((((.....))))))....)))))))). ( -33.30)
>DroWil_CAF1 30320 120 + 1
ACUCUUUCCCAUAUUAGCUAUCUAAGCGAUCUAGAGCGUAUAGAGCAAGCUGAUUAUUUGCCAACAGAGCAGGAUAUUUUGCGUGCCCGUGUGCCAACAACUGGCAUUCUUGAGUACCCA
.((((....((.(((((((.((((.(((........))).))))...)))))))....)).....))))..((.(((((.(.(((((..(((....)))...))))).)..))))).)). ( -29.40)
>DroAna_CAF1 9648 112 + 1
AUCCC--------UCAGCUAUCUGAGCGACCUGGCUCGUAUUGAGCAGGCUGACUACUUGCCCACCGAGCAGGACAUUCUGCGUGCUCGAGUGCCGACCACCGGCAUUCUUGAGUAUCCA
.((.(--------((((....))))).))((((.((((...((.(((((.......))))).)).)))))))).......(.((((((((((((((.....))))))))..)))))).). ( -41.90)
>DroPer_CAF1 12678 120 + 1
AUUCCUUCCUUACUUAGCUACUUAAGCGACAUAGAGCGCAUUUCACAGCCCGACUACCUGGCCACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACCACUGGCAUUCUAGAGUACCCA
..........(((((.(((.....)))......((((((...(((..(((.(.....).)))...)))(((((....)))))))))))(.((((((.....)))))).)..))))).... ( -32.80)
>consensus
AUUCC__CCUAACUUAGCUACUUAAGCGACCUAGAUCGAAUUGAACAGGCUGACUACUUGCCAACUGAGCAGGAUAUUCUGCGUGCUCGUGUGCCGACAACUGGCAUUCUUGAGUAUCCA
................(((.....)))....................(((.........)))......(((((....)))))(((((((.((((((.....))))))...)))))))... (-24.20 = -23.78 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:50 2006