Locus 2201

Sequence ID 2R_DroMel_CAF1
Location 8,125,639 – 8,125,733
Length 94
Max. P 0.725915
window3631

overview

Window 1

Location 8,125,639 – 8,125,733
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.18
Mean single sequence MFE -21.37
Consensus MFE -15.27
Energy contribution -16.75
Covariance contribution 1.48
Combinations/Pair 1.17
Mean z-score -1.86
Structure conservation index 0.71
SVM decision value 0.41
SVM RNA-class probability 0.725915
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8125639 94 - 20766785
UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG---UAUCUGUAUUCG
....((.(((.(((((((.(((.....((....((((((((((.........)))))))))).))...)))..))))....)---))...))).)). ( -23.60)
>DroPse_CAF1 2834 88 - 1
UUAGCAUUAUUAACGGUUUGUCUAUGAACUAAU------UGCCUACUGAUCUGAUUGCUGACUGUACUUGUACUUGUAUUUG---UAACGGUAUCUG
.(((((.......((((..((..((......))------.))..)))).......)))))(((((((..(((....)))..)---).)))))..... ( -14.04)
>DroSec_CAF1 11938 88 - 1
UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG---UAU------UUG
(((((((((........((........))(((.((((((((((.........)))))))))).))).)))))))))......---...------... ( -22.40)
>DroSim_CAF1 2802 94 - 1
UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG---UAUUUGUAUUUG
(((((((((........((........))(((.((((((((((.........)))))))))).))).)))))))))......---............ ( -22.40)
>DroEre_CAF1 2943 88 - 1
UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAU---------CUGUAUCUG
...((((.((..(..(((.(((.....((....((((((((((.........)))))))))).))...)))..)))..)---------..)))))). ( -23.30)
>DroYak_CAF1 12351 97 - 1
UUAAGAUUGUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUUUUUUAUCUGUAUCUG
...((((.......((((.(((.....((....((((((((((.........)))))))))).))...)))..)))).........))))....... ( -22.49)
>consensus
UUAAGAUUAUUUACGCUGUGCCUAUUAACUACUGGUACUGGUCUACCUUUCUGACUAGUGCCUGUGCUGGUCUUAGUAUCUG___UAUCUGUAUCUG
(((((((((........((........))(((.((((((((((.........)))))))))).))).)))))))))..................... (-15.27 = -16.75 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:43 2006