| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,156,082 – 1,156,185 |
| Length | 103 |
| Max. P | 0.514283 |
| Location | 1,156,082 – 1,156,185 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.21 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -4.62 |
| Energy contribution | -4.86 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.23 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1156082 103 + 20766785 GAUAUA--UAUAUUCAUGUUCUCC---------UGCUUUUUAUAAGUAGGUAAACAAUUUCGAUCAAAUGCCUUUAAUUGUUUCCAAUAAGCUUCAAUUGAUUCGAUUUGAACG------ ......--....((((((((..((---------(((((.....)))))))..))))...((((((((.((......((((....))))......)).)))).))))..))))..------ ( -20.30) >DroSec_CAF1 10263 107 + 1 GAUAU----AUAUUCAUGUUCUCC---------UGCUUUAUAUAAGUAGGUAAACAUUUUCGAUCAAAUGCCCUCAAUUGUUUCCAAUAAGCUUCAAUUGAUUCAAUUUGAACGCUAAAA .....----......(((((..((---------(((((.....)))))))..)))))...((.((((((....(((((((..............)))))))....)))))).))...... ( -23.34) >DroSim_CAF1 5826 116 + 1 GAUAU----AUAUUCAUGUUCUCCUUUUUGUUCUGCUUUAUAUAAGUAGGUAAACAUUUGCGAUCAAAUGCUCUCAAUUGUUUCCAAUAAGCUUCAAUUGAUUCAAUUUGAACGCUAAAA .....----......(((((..(((.(((((..........))))).)))..)))))..(((.((((((....(((((((..............)))))))....)))))).)))..... ( -22.24) >DroEre_CAF1 5849 100 + 1 GAUAU----AUAUUAAAGUUCUCC---------UGCUUUAUAUA--UAAGUACAGAAGUUUGAUGAAAUGCCCUUAAUUGUUUCCAAUAAGCUUCAAUUGCU-----UUGAACGCUAAAC ..(((----((((.(((((.....---------.))))))))))--))((((..((((((((..((((((........))))))...))))))))...))))-----............. ( -16.90) >DroYak_CAF1 6310 103 + 1 GAUAUAUGUAUAUUAAUAGUCUCC---------UGUUUUAUAUA--UAGGUAGACAAGUACCAUAAAGUGCCC-UAAUUGUUUUCAAUAAGCUUCAAUUGAU-----UUGAACGCUAAAC ..................((((((---------(((.......)--)))).))))..((((......))))..-..((((....)))).((((((((.....-----))))).))).... ( -18.80) >consensus GAUAU____AUAUUCAUGUUCUCC_________UGCUUUAUAUAAGUAGGUAAACAAUUUCGAUCAAAUGCCCUUAAUUGUUUCCAAUAAGCUUCAAUUGAUUC_AUUUGAACGCUAAAA .................((((............(((((.........))))).....................(((((((..............)))))))........))))....... ( -4.62 = -4.86 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:43 2006