Locus 2195

Sequence ID 2R_DroMel_CAF1
Location 8,111,609 – 8,111,699
Length 90
Max. P 0.728078
window3623

overview

Window 3

Location 8,111,609 – 8,111,699
Length 90
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.30
Mean single sequence MFE -29.35
Consensus MFE -14.36
Energy contribution -14.20
Covariance contribution -0.16
Combinations/Pair 1.42
Mean z-score -2.15
Structure conservation index 0.49
SVM decision value 0.42
SVM RNA-class probability 0.728078
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8111609 90 - 20766785
AAAAAUAGACAAAUGGCCAGG-GAGCGAGAA---------------GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUU------UCCCCAUUG--CUCCUCCCAU
............((((...((-((((((...---------------.....(((.(.....)..)))(((.((((.((.....))))------))))).)))--))))).)))) ( -28.30)
>DroPse_CAF1 28281 81 - 1
AAAAAUAGCCAAAGAGCGAGGCGAGCUAUUG---------------CUAAAGCUAG---AGCAGUGCGGGCGAAAUGUUGUGUUGUU------UC---AUUU--GUCUU----U
.......(((.....(((..((.((((....---------------....))))..---.))..))).)))((((((......))))------))---....--.....----. ( -19.50)
>DroSec_CAF1 26601 90 - 1
AAAAAUAGACAAAUGGCCAGG-GAGCGAGAA---------------GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUU------UCCCCAUUG--CUCCUCCCAU
............((((...((-((((((...---------------.....(((.(.....)..)))(((.((((.((.....))))------))))).)))--))))).)))) ( -28.30)
>DroSim_CAF1 29854 90 - 1
AAAAAUAGACAAAUGGCCAGG-GAGCGAGAA---------------GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCCGUGUGCCU------UCCCCAUUG--CUCCUCCCAU
............((((...((-((((((...---------------(((..((.......))(((((((((.....))).)))))))------))....)))--))))).)))) ( -31.30)
>DroEre_CAF1 27001 89 - 1
AAAAAUAGACAAAUAGCCAGG-GAGCGAGU----------------GAAAUGUGGGAAAAGCGGCGCGGGCGAUAUGUUGUGCGCUU------UCCCCAUUG--CUCCUCCCAU
...................((-(((.((((----------------..((((.((((((.(((.(((((........))))))))))------)))))))))--)))))))).. ( -34.30)
>DroYak_CAF1 26817 113 - 1
AAAAAUAGACAAAUAGCCAGG-GAGCGAGAAAAGUGGGAAAAGCUAGAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUUUCCCUUUCCCCAUUGCGCUCCACCCAU
....................(-(((((.....((((((....(((.....)))((((((((((.(((((........)))))))))))...)))))))))).))))))...... ( -34.40)
>consensus
AAAAAUAGACAAAUAGCCAGG_GAGCGAGAA_______________GAAAAGCGAGAAAAGCGGCGCGGGCGAAAUGCUGUGUGCUU______UCCCCAUUG__CUCCUCCCAU
...................((.(((.(((......................((.......))(((((((((.....))).))))))..................)))))))).. (-14.36 = -14.20 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:35 2006