Locus 2193

Sequence ID 2R_DroMel_CAF1
Location 8,102,815 – 8,102,918
Length 103
Max. P 0.902830
window3620

overview

Window 0

Location 8,102,815 – 8,102,918
Length 103
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.89
Mean single sequence MFE -24.33
Consensus MFE -12.80
Energy contribution -12.97
Covariance contribution 0.17
Combinations/Pair 1.25
Mean z-score -2.44
Structure conservation index 0.53
SVM decision value 1.03
SVM RNA-class probability 0.902830
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8102815 103 - 20766785
CGUUUGCUGCU---GCUGUUACCUCUGACUCUUCUUCUUCUUAUUCUUGUAAGUUG---UAGAUACAGAACAUGUACCAGCAGCUCUCACACA----CCA-CCCGCCCGCCCCC
.((.((..(((---((((.(((.((((.....(((....(((((....)))))...---.)))..))))....))).)))))))...)).)).----...-............. ( -23.30)
>DroSec_CAF1 17798 107 - 1
CGUUUGCUGCUGCUGCUGCUACCUCUGACUCUUCUUCUUCUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUGCUCACAAA----CCAACCCGCCCUCCCCC
.(((((..((.(((((((.(((.((((.....(((....(((((....)))))...---.)))..))))....))).)))))))))...))))----)................ ( -26.00)
>DroSim_CAF1 20673 107 - 1
CGUUUGCUGCUGCUGCUGCUACCUCUGACUCUUCUUCUUCUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUGCUCACAAA----CCAACCCGCCCUCCCCC
.(((((..((.(((((((.(((.((((.....(((....(((((....)))))...---.)))..))))....))).)))))))))...))))----)................ ( -26.00)
>DroEre_CAF1 17890 98 - 1
CGUUUGCUGCU---GCUGCUACCUCUGACUCUU------CUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUACUGACACA----ACAACCCGCCCGCCCCC
.((((((((((---(.(((....((((..(((.------(((((....)))))...---.)))..))))....))).))))))))..)))...----................. ( -24.10)
>DroYak_CAF1 17842 102 - 1
CGUUUGCUGCU---GCUGUUACCUCUGACUCUU------CUUAUUCUUGUAAGUUG---UAGAUACAGAAUAUGUACCAGCAGUACUCAUACCCCAUACCACCCGCCCGGCCCC
.((.((.((((---((((.(((.((((..(((.------(((((....)))))...---.)))..))))....))).))))))))..)).))..........((....)).... ( -22.00)
>DroPer_CAF1 18085 97 - 1
GGAUUGCUGCA---GCCUUUGCCUUUGCCUUUG-----CCUGGCUCUUGUAAGCUGUAGUAGAUACAGAAUGUAUACCAGCAAGCCCCGCU---------CCCUCCCCUCCCCC
((.((((((((---((..((((....(((....-----...)))....))))))))))))))((((.....)))).))(((.......)))---------.............. ( -24.60)
>consensus
CGUUUGCUGCU___GCUGCUACCUCUGACUCUU_____UCUUAUUCUUGUAAGUUG___UAGAUACAGAAUAUGUACCAGCAGUACUCACACA____CCAACCCGCCCGCCCCC
.....((((((...((.......((((..(((.......(((((....))))).......)))..))))....))...)))))).............................. (-12.80 = -12.97 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:33 2006