| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,090,896 – 8,090,995 |
| Length | 99 |
| Max. P | 0.815888 |
| Location | 8,090,896 – 8,090,995 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.18 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -10.86 |
| Energy contribution | -11.75 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8090896 99 - 20766785 AACCCCAAUGCGCGGAAUAUCUGAAAAAUUCUAGGCACCGAAUCGUGCUAAGAAA-------CAAUUGGAUAAUCAAACAGUGCUUGGAGAAAUUUCAAAAAAUGU ....((((.((((.((.((((..(....((((.(((((......))))).)))).-------...)..)))).)).....)))))))).................. ( -25.80) >DroSec_CAF1 5891 99 - 1 AAUCCCAAAGCGCGGAAAAUCUGAAAAAUUCUAGGCACCGAAUCGUGCUAAAAAA-------CAAUUUGAUAUUCAAUCAGUGCUUGGGGAAAUUUCAUAAAAUGU ..((((.((((((.(((.(((............(((((......)))))......-------......))).))).....)))))).))))............... ( -23.95) >DroSim_CAF1 6042 99 - 1 AAUCCCAAAGCGCGGAAAAUCUGAAAAAUUCUAGGCACCGAAUCGUGCUAAGAAA-------CAAUUUGACAUUCAAACAGUGCUUGGGGAAAUUUCAAAAAAUGU ..((((.((((((...............((((.(((((......))))).)))).-------...((((.....))))..)))))).))))............... ( -26.40) >DroEre_CAF1 6040 98 - 1 AAUCCCAAAGCGCGGAAAAUCUGAAAAAUUCUAGGCACCGAAUCGUGCUGUGGAA-------AAAUUGUAUAAUUAAACAGUGCUUCGUGAAGUUUCAA-AAAUGU ..((.(.((((((...............((((((((((......))))).)))))-------....(((........))))))))).).))........-...... ( -17.80) >DroYak_CAF1 6016 98 - 1 AAUCCCAAAGCGCGGAAAAUCUGAAAAAUCCUAGGCACCGAAUCGUGCUAGGAAU-------AAUUUUGAUAAUUAAACAGUGCUUUUGGAUGUUUCAA-AAAUUC .((((.(((((((...............((((((.(((......))))))))).(-------((((.....)))))....))))))).)))).......-...... ( -25.90) >DroAna_CAF1 5599 97 - 1 AGGCCCAAGGCGCGGAAUAUCUGGAAGAUCCUUGGCACAGAAUCGUGCUGAAAGAGGGAGGAUAAUAUUAAAUUAACUUAAU-CUU-GAGAAAU-------AAACU ..(((...)))........(((((.....))(..((((......))))..)((((..(((..((((.....)))).)))..)-)))-.)))...-------..... ( -17.30) >consensus AAUCCCAAAGCGCGGAAAAUCUGAAAAAUUCUAGGCACCGAAUCGUGCUAAGAAA_______CAAUUUGAUAAUCAAACAGUGCUUGGGGAAAUUUCAA_AAAUGU .......((((((((.....))......((((.(((((......))))).))))..........................)))))).................... (-10.86 = -11.75 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:28 2006