Locus 2187

Sequence ID 2R_DroMel_CAF1
Location 8,082,447 – 8,082,566
Length 119
Max. P 0.984877
window3613

overview

Window 3

Location 8,082,447 – 8,082,566
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 76.34
Mean single sequence MFE -26.55
Consensus MFE -18.23
Energy contribution -19.23
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.69
SVM decision value 1.99
SVM RNA-class probability 0.984877
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8082447 119 + 20766785
UCCACUUCCGAGUGGCAAAACGCUCUGCCCUACAAUCAAAUACCCGGACCUAAGCCCAUCCCCAUUCUGGGCAAUACAUGGAGGUAACCGAAAACCAAACCAAACCAAAACCCAUCAUC
...(((((((((((......)))))............................(((((.........))))).......)))))).................................. ( -23.00)
>DroSim_CAF1 184 114 + 1
UCCACUUCCGAGUGGCAAAACGCUCUGCCCUACAAUCAGAUUCCCGGACCUAAGCCCAUCCCCAUUCUGGGCAAUACAUGGAGGUAACCGAAAACCAAACCA-----AAACCGAUCAUC
...(((((((((((......)))))(((((........(((....((........)))))........)))))......)))))).................-----............ ( -23.89)
>DroEre_CAF1 184 108 + 1
UCCACUUCCGAGUGGCAAAACGCUCUGCCCUACAAUCAAAUUCCCGGACCCAAGCCCAUUCCUAUUUUGGGCAAUACAUGGAGGUAAU--AAAACC---------GAUAACCCAUCAAC
...(((((((((((......)))))............................(((((.........))))).......))))))...--......---------(((.....)))... ( -24.00)
>DroYak_CAF1 184 107 + 1
UCCACUUCCGAGUGGCAAAACGCUCUGCCCUACAAUCAGAUUCCCGGCCCUAAGCCCAUUCCUAUUCUGGGCAAUACCUGGAGGUAAU--AAAA-C---------GAAAACCCAUCAUC
...(((((((((((......)))))(((((...(((..((.....(((.....)))...))..)))..)))))......))))))...--....-.---------.............. ( -26.90)
>DroAna_CAF1 214 96 + 1
GCCACAUCAGAGUGGCAGAAUGCCCUGCCCUACAAUCAGAUACCAGGACCAAAGCCCAUACCCAUUUUGGGCAACACCUGGCGGUUAG--UAU---------------------UCGAC
(((((......))))).((((((...(((((......))...(((((......(((((.........)))))....))))).)))..)--)))---------------------))... ( -32.00)
>DroPer_CAF1 199 111 + 1
UCCACUCCCGAAUGGCAGAACGCUCUGCCCUACAAUCAGAUACCUGGACCCAAGCCCCUACCCAUUCUGGGCAACACCUGGCGGUAGG--UACU-CGUAUAA-----GAGUCGCGACAC
(((((((......((((((....)))))).(((..((((....)))).....((..((((((....(..((.....))..).))))))--..))-.)))...-----)))).).))... ( -29.50)
>consensus
UCCACUUCCGAGUGGCAAAACGCUCUGCCCUACAAUCAGAUACCCGGACCUAAGCCCAUACCCAUUCUGGGCAAUACAUGGAGGUAAC__AAAA_C___________AAACCCAUCAAC
...(((((((.((((((........))))........................(((((.........)))))...)).))))))).................................. (-18.23 = -19.23 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:26 2006