| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,079,334 – 8,079,448 |
| Length | 114 |
| Max. P | 0.804496 |
| Location | 8,079,334 – 8,079,424 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -13.48 |
| Energy contribution | -15.12 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8079334 90 + 20766785 GAGUGUAAAAACGGGGACAGAAAACAGAGAAAUAAGAAAUUAGGCGAACAGUAGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUG ..((......))((((((((((....((....(((....))).((..(((((((...)))))))))....))..))))))))))...... ( -21.40) >DroSec_CAF1 44198 87 + 1 GAGUGUAAAAACGGGGACAGAAAACAGAG---UAAGAAAUUAGGCGAACAGCAGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUG ..((......))((((((((((....((.---........((((((........))))))..........))..))))))))))...... ( -21.51) >DroSim_CAF1 26660 87 + 1 GAGUGUAAAAACGGGGACAGAAAACAGAG---UAAGAAAUUAGGCGAACAGCAGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUG ..((......))((((((((((....((.---........((((((........))))))..........))..))))))))))...... ( -21.51) >DroEre_CAF1 42685 84 + 1 GAGUGUAAAAACGGUGACAGAAAAAAGAG---UAAGAAAUUAGACGAACA---GCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUG ..((......))((.(((((((....((.---........((((((....---.))))))..........))..))))))).))...... ( -18.81) >DroYak_CAF1 42660 84 + 1 GAGUGUAAAAACGGGGACAGAAAACAAAG---UAAGAAAUUAGACGAACA---UUGUCUAUUGUGCAGGACCGGUUCUGUCUCUAAACUG ..((......))((((((((((......(---((......(((((((...---)))))))...)))........))))))))))...... ( -19.44) >DroAna_CAF1 43117 70 + 1 GAGUGUAAAAAA----UCAAAGGACAGAG----------GUCGACGA-GAGAAGCGUUUAAUGUGCAUGAU-----CUGUCCUUGGUCUG ...........(----((((.(((((((.----------.(((.(..-..)..(((.......))).))))-----)))))))))))... ( -16.00) >consensus GAGUGUAAAAACGGGGACAGAAAACAGAG___UAAGAAAUUAGACGAACAG_AGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUG ............((((((((((....((............((((((........))))))..........))..))))))))))...... (-13.48 = -15.12 + 1.64)
| Location | 8,079,347 – 8,079,448 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 93.73 |
| Mean single sequence MFE | -22.65 |
| Consensus MFE | -20.37 |
| Energy contribution | -20.57 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8079347 101 + 20766785 GGGACAGAAAACAGAGAAAUAAGAAAUUAGGCGAACAGUAGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUGUCACACGACAUUUCAUAUUUAUCA (((((((((....((....(((....))).((..(((((((...)))))))))....))..))))))))).....((((....)))).............. ( -22.70) >DroSec_CAF1 44211 98 + 1 GGGACAGAAAACAGAG---UAAGAAAUUAGGCGAACAGCAGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUGUCACACGACAUUUCAUAUUUAUCA (((((((((....((.---........((((((........))))))..........))..))))))))).....((((....)))).............. ( -22.81) >DroSim_CAF1 26673 98 + 1 GGGACAGAAAACAGAG---UAAGAAAUUAGGCGAACAGCAGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUGUCACACGACAUUUCAUAUUUAUCA (((((((((....((.---........((((((........))))))..........))..))))))))).....((((....)))).............. ( -22.81) >DroEre_CAF1 42698 95 + 1 GUGACAGAAAAAAGAG---UAAGAAAUUAGACGAACA---GCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUGUCACACGACAUUUCAUAUUUAUCA (((((((.....((((---........((((((....---.))))))....((((((....))))))))))...))))))).................... ( -24.20) >DroYak_CAF1 42673 95 + 1 GGGACAGAAAACAAAG---UAAGAAAUUAGACGAACA---UUGUCUAUUGUGCAGGACCGGUUCUGUCUCUAAACUGUCACACGACAUUUCAUAUUUAUCA (((((((((......(---((......(((((((...---)))))))...)))........))))))))).....((((....)))).............. ( -20.74) >consensus GGGACAGAAAACAGAG___UAAGAAAUUAGGCGAACAG_AGCGUCUAUUGUGCAGGAUCGGUUCUGUCUCUAAACUGUCACACGACAUUUCAUAUUUAUCA (((((((((....((............((((((........))))))..........))..))))))))).....((((....)))).............. (-20.37 = -20.57 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:25 2006