Locus 2172

Sequence ID 2R_DroMel_CAF1
Location 8,053,277 – 8,053,380
Length 103
Max. P 0.500000
window3587

overview

Window 7

Location 8,053,277 – 8,053,380
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.64
Mean single sequence MFE -17.08
Consensus MFE -16.78
Energy contribution -16.62
Covariance contribution -0.16
Combinations/Pair 1.07
Mean z-score -1.25
Structure conservation index 0.98
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8053277 103 - 20766785
GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU------UCCAUAGCUUCCCCU-----C------CCGAUGA
....................(((...(((((....)))))..(((((((...........))))))).............------...............-----.------..))).. ( -15.10)
>DroSec_CAF1 18308 108 - 1
GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU------UCCAUCGCUUCACUU-----CCCU-ACCCGACGA
...................((((...(((((....)))))..(((((((...........))))))).............------...............-----....-....)))). ( -17.30)
>DroSim_CAF1 1526 108 - 1
GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU------UCCAUCGCUUCACUU-----CCCU-ACACGACGA
...................((((...(((((....)))))..(((((((...........))))))).............------...............-----....-....)))). ( -17.30)
>DroEre_CAF1 16616 113 - 1
GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCGAAGUUCCCGUCCCAAUCCCAUCCCUUCCCUU-----CCU--UCCUGACAA
..(((((...................(((((....)))))..(((((((...........)))))))..)))))...........................-----...--......... ( -17.90)
>DroYak_CAF1 16439 119 - 1
GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCGAACUUCCAAUCCCAA-CCCAUUCCUUCGCUUCCCUUCCUAGUACCGACUA
(((((.....................(((((....)))))..(((((((...........)))))))..................-.......................)))))...... ( -17.80)
>consensus
GUACUUCCCUCUCUAUUCCUGUCUACGUGACUUCCGUCACUUGGCUUGCCCAUUUGUCCCGCGAGCUUCCAAGUUCCUAU______UCCAUCGCUUCACUU_____CCC__ACCCGACGA
....................(((...(((((....)))))..(((((((...........)))))))................................................))).. (-16.78 = -16.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:01 2006