Locus 217

Sequence ID 2R_DroMel_CAF1
Location 1,552,766 – 1,552,882
Length 116
Max. P 0.689428
window485

overview

Window 5

Location 1,552,766 – 1,552,882
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.62
Mean single sequence MFE -29.33
Consensus MFE -23.60
Energy contribution -23.35
Covariance contribution -0.25
Combinations/Pair 1.24
Mean z-score -1.62
Structure conservation index 0.80
SVM decision value 0.33
SVM RNA-class probability 0.689428
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1552766 116 - 20766785
---UGAUAAUGCCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGAAAAUAUUU-UUGGAAACUGAGAAUUGCUGUUGAAUUUACAUUCUUCAUAA
---...........(((..(((...)))..)))(((..(((.(((((((((((((((...........((((....))-))(....)...)))))))))..)))))).)))..))).... ( -23.70)
>DroSec_CAF1 2314 119 - 1
UGGUAAUAAUACCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGUACAUAUUU-UUGGAAACUGAUAAUCGCUGUUGAAUUUGUAUUCUUCACAU
(((((....)))))(((..(((...)))..)))(((..((((((((((((((((((......(((((..(.((.....-.)).)..)))))))))))))..))))))))))..))).... ( -35.60)
>DroSim_CAF1 2701 116 - 1
---UGAUAAUACCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGCACAUCUUU-UUGGAAACUGAUAAUCGCUGUUGAAUUUGUAUUCUUCACAU
---...........(((..(((...)))..)))(((..((((((((((((((((((......(((((....((.....-.))....)))))))))))))..))))))))))..))).... ( -31.60)
>DroEre_CAF1 2799 117 - 1
---UGAUAAGGGCAGGCGACAGUUGCUGCAGCCGAAUUAUGCAAAUGUUGGCGACUUAAUAAAUUCCGGCAAAUAUGUUUGGGAAACAGCUUAUCGCCUAUAAGUUUCUGUUCUUCACAG
---((..(((((((((.((((.((((..............)))).))))(((((.........((((((((....)).)))))).........)))))........)))))))))..)). ( -26.41)
>consensus
___UGAUAAUACCAGGCGACAGUUGCUGGAGCCGAAUUAUGCAAAUUUUAGCGAUUUAUUACAUUAGGGCAAAUAUUU_UUGGAAACUGAUAAUCGCUGUUGAAUUUGUAUUCUUCACAU
..............(((..(((...)))..)))(((..((((((((((.(((((((((......)))).............(....)......)))))...))))))))))..))).... (-23.60 = -23.35 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:41 2006