Locus 2167

Sequence ID 2R_DroMel_CAF1
Location 8,049,942 – 8,050,059
Length 117
Max. P 0.992440
window3579

overview

Window 9

Location 8,049,942 – 8,050,059
Length 117
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 87.01
Mean single sequence MFE -22.80
Consensus MFE -18.70
Energy contribution -18.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.09
Structure conservation index 0.82
SVM decision value 2.33
SVM RNA-class probability 0.992440
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8049942 117 - 20766785
AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCAAGA--AAAACAAAAAAAAAAAACACCAUAAAAA
........((((((((........)))))))).((((((.......((.(((....)))))(((....(((....)))....)))..))--))))........................ ( -23.40)
>DroSec_CAF1 14989 107 - 1
AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCAAA------------AAAAAAAAAAGCAUAAAAA
........((((((((........))))))))((((((........((.(((....)))))(((....(((....)))....)))...------------.....))))))........ ( -21.90)
>DroEre_CAF1 13256 112 - 1
AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUACUUUACAAG-------AAGAAAAAAAAGAAAGAAA
..((((..((((((((........)))))))).............(((((((....))).........(((....))).........)))).)-------)))................ ( -23.70)
>DroYak_CAF1 13154 105 - 1
AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCUUCA--------------AAAAAAAGAAAAUAAA
........((((((((........))))))))..(((((.......((.(((....)))))(((....(((....)))....)))....--------------.......))))).... ( -22.20)
>consensus
AACUUCAUUUGCUUGCCAACCAAAGCGAGCGACUUUUUCAAUUAAUGUAGCCCAUGGGCACGCGAAACCUGAAACCAGAAAAUGCAAAA___________AAAAAAAAAAGCAAAAAAA
...(((..((((((((........))))))))..............((.(((....)))))..)))..(((....)))......................................... (-18.70 = -18.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:54 2006