Locus 2164

Sequence ID 2R_DroMel_CAF1
Location 8,047,917 – 8,048,032
Length 115
Max. P 0.733819
window3576

overview

Window 6

Location 8,047,917 – 8,048,032
Length 115
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 96.10
Mean single sequence MFE -28.10
Consensus MFE -24.20
Energy contribution -24.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.86
SVM decision value 0.43
SVM RNA-class probability 0.733819
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8047917 115 - 20766785
UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC-GGAACGAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU
..........((((((..(((((.(((((((....((((((((.-(((....(((.......))).))).......(....)))))))))...)))))))))))).....)))))) ( -26.70)
>DroSec_CAF1 12980 115 - 1
UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC-GAAACGAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU
..........((((((..(((((.(((((((....(((((((((-(...)))..(((.........)))..............)))))))...)))))))))))).....)))))) ( -25.00)
>DroEre_CAF1 11246 115 - 1
UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC-GGAGGAAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU
..........((((((..(((((.(((((((....((((((((.-...(((.(((.......))).))).......(....)))))))))...)))))))))))).....)))))) ( -27.40)
>DroYak_CAF1 11170 116 - 1
CAUAACCACCAUAUGGAUAUGUUUAUUUUGACAAGCGCACCCUCUGGAGGAAGCGGAAAAAAUGUGUCCAGGAACAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU
..........(((((((((((((.(((((((....(((((((((((((....(((.......))).))))).....(....)))))))))...)))))))))))))))...))))) ( -33.30)
>consensus
UAUAACCACCAUAUGGAAAUGUUUAUUUUGACAAGCGCACCCUC_GGAACAAGCGGAAAAAAUGUGUCCAGGAAUAUGAAAAGGGGUGCGAAAUUAGAAUAACAUGUCACUCAUAU
..........(((((((.(((((.(((((((....((((((((...........(((.........))).......(....)))))))))...)))))))))))).))...))))) (-24.20 = -24.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:51 2006