Locus 2163

Sequence ID 2R_DroMel_CAF1
Location 8,047,306 – 8,047,425
Length 119
Max. P 0.978477
window3575

overview

Window 5

Location 8,047,306 – 8,047,425
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.07
Mean single sequence MFE -26.80
Consensus MFE -19.16
Energy contribution -21.32
Covariance contribution 2.16
Combinations/Pair 1.12
Mean z-score -2.58
Structure conservation index 0.71
SVM decision value 1.81
SVM RNA-class probability 0.978477
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8047306 119 + 20766785
AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG-CUUUAUGUGGUGGGUAUGUAAUUAAAAAAAAAAGAAAACAACUUUACUUA
.((((((....((((((....))))))))))))..(((((((....((((.(((((((((((.......-..)))))))).))).)))))))))))........................ ( -29.40)
>DroSec_CAF1 12364 113 + 1
AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG-CUUUAUGUGGUGGGUAUGUAAUUAAAAAAA------AACAACUUUACUUA
.((((((....((((((....))))))))))))..(((((((....((((.(((((((((((.......-..)))))))).))).)))))))))))....------.............. ( -29.40)
>DroEre_CAF1 10620 110 + 1
AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUUUCUCGCAUAACUACAAG-CUUUAUGCGGUGGGCAUGUAAUUAAAAAAA---------AACUUUACUAA
.((((((....((((((....))))))))))))..(((((((....((((.(((((((((((.......-..)))))))).))).)))))))))))....---------........... ( -25.70)
>DroYak_CAF1 10564 109 + 1
AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG-CUUUAUGCGGUGGGUAUGUAAUUAAAA-AA---------AACUUUACUUA
.((((((....((((((....))))))))))))..(((((((....((((.(((((.(((((.......-..))))).)).))).))))))))))).-..---------........... ( -25.50)
>DroAna_CAF1 13040 101 + 1
AUGGCAUGUCGCUAGUC-CAGGC-------CCAGAUUUAAUUAAAAGCAUUCCCUGACAUAACCCCAGGGCUUACUGUUUUGGAGCGGUAAUUAAAAA-----------UGUUAUGCUUG
.((((.....))))...-(((((-------.((..((((((((...((..(((..(((((((((....)).))).))))..)))))..))))))))..-----------))....))))) ( -24.00)
>consensus
AUGGCAUGUCAUAAGUCGCAGGACUUAAUGCCAGAUUUAAUUAAAAGCAUUCCCUCACAUAACUUCAAG_CUUUAUGUGGUGGGUAUGUAAUUAAAAAAA_________AACUUUACUUA
.((((((....((((((....))))))))))))..(((((((....((((.(((((((((((..........)))))))).))).)))))))))))........................ (-19.16 = -21.32 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:50 2006