Locus 2160

Sequence ID 2R_DroMel_CAF1
Location 8,045,228 – 8,045,336
Length 108
Max. P 0.754807
window3572

overview

Window 2

Location 8,045,228 – 8,045,336
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.99
Mean single sequence MFE -29.18
Consensus MFE -16.52
Energy contribution -16.44
Covariance contribution -0.08
Combinations/Pair 1.34
Mean z-score -2.10
Structure conservation index 0.57
SVM decision value 0.49
SVM RNA-class probability 0.754807
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8045228 108 + 20766785
CAAUUUGUUGAUAGUAUUUUC----UGUUGUUGU----AAAAAUGCCCCGCUUGCAAGCGUGCAAUAACAGCAACAACAAGACCUGAAACAACAACAAU----AGGCGGCGAAUGCCGGC
....((((((...((.((.((----(((((((((----.....(((..((((....)))).)))......)))))))).)))...)).))..)))))).----.(.((((....)))).) ( -28.60)
>DroSec_CAF1 10314 112 + 1
CAAUUUGUUGAUAGUAUUUUC----UGUUGUUGUUGUAAAAAAUGCCUCGCUUGCAGGCGUGCAACAACAGCAACAACGAGACCUGAAACAACAACACU----AGGCGGUGAAUGCCGGC
....((((((.(((..(((..----((((((((((((.....((((((.(....)))))))...))))))))))))..)))..)))...))))))....----.(.((((....)))).) ( -34.50)
>DroEre_CAF1 8560 99 + 1
CAAUUUGUUGAUAGUAUUUUC----UGUUGUUGU----AAAAAUGCUCCGCUUGCAGGCGUGCAAC---------AACAAGACCUGAAACAACAAAACU----ACGCGGUGAAUGCCGGC
...(((((((....((..(..----(((((((((----(....(((.......)))....))))))---------))))..)..))...)))))))...----...((((....)))).. ( -27.30)
>DroYak_CAF1 8437 112 + 1
CAAUUUGUUGAUAGUAUUUUUUUGUUGUUGUUGU----AAAAAUGCUCUGCUUGCAGGCGUGCAACAACAGCAACAACAAGACCUAAAACAACAAAACU----ACGCGGCGAUUGCCGGC
...(((((((.(((..((((.(((((((((((((----....((((.(((....)))))))...))))))))))))).)))).)))...)))))))...----...((((....)))).. ( -38.10)
>DroAna_CAF1 11204 110 + 1
CAAUUUGUUGAUAGUGUUGU-----AGUUGUUGU---AAAAAAUGCUCCGCUUGCAAGCGCACUACAGCCCCAAAA--AAAACCUAAAACAACAAAAAUAAAUAAAUGGGGAAUGCCGGC
......((((.(((((((((-----((.((..((---(.....)))..)).)))))...))))))...(((((...--............................))))).....)))) ( -17.38)
>consensus
CAAUUUGUUGAUAGUAUUUUC____UGUUGUUGU____AAAAAUGCUCCGCUUGCAGGCGUGCAACAACAGCAACAACAAGACCUGAAACAACAAAACU____ACGCGGCGAAUGCCGGC
....((((((.(((..(((......(((((((((..............((((....)))).)))))))))........)))..)))...))))))...........((((....)))).. (-16.52 = -16.44 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:47 2006