Locus 2158

Sequence ID 2R_DroMel_CAF1
Location 8,040,800 – 8,040,914
Length 114
Max. P 0.894711
window3568

overview

Window 8

Location 8,040,800 – 8,040,914
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.62
Mean single sequence MFE -28.94
Consensus MFE -25.84
Energy contribution -26.96
Covariance contribution 1.12
Combinations/Pair 1.06
Mean z-score -1.46
Structure conservation index 0.89
SVM decision value 0.98
SVM RNA-class probability 0.894711
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8040800 114 + 20766785
-----GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU-UUUGGCAUGCGACAAAUAUUUCCCACCAUAAGGGGGAGCCAGAACUUUAAUUUAUGG
-----.(((((((..((((((((.((.........)).))))))))((((((.(((.((...-..))))).)))))).....(((((.((....)))))))............))))))) ( -33.60)
>DroSec_CAF1 5789 113 + 1
-----GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU-UUUGGCAUGCGACAAAUAUUUCCCACCAAAAG-GGGAGCCAGAACUUUAAUUUAUGG
-----.(((((((..((((((((.((.........)).))))))))((((((.(((.((...-..))))).))))))....((((((.......)-)))))............))))))) ( -31.00)
>DroEre_CAF1 4439 113 + 1
-----GCCAUGAAAUGCAAUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU-UUUGGCAUGCGACAAAUAUUUCCCACCAUAAG-GGGAGCCACAACUUUAAUUUAUGG
-----.(((((((..(((.....))).........((((.......((((((.(((.((...-..))))).))))))....((((((.......)-)))))...)))).....))))))) ( -27.30)
>DroYak_CAF1 4096 113 + 1
-----GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAGUU-UUUGGCAUGCGACAAAUAUUUCCCACCAAAAG-GGGAGCCAGAACUUUAAUUUAUGG
-----.(((((((..((((((((.((.........)).))))))))((((((.(((.(((..-.)))))).))))))....((((((.......)-)))))............))))))) ( -30.70)
>DroAna_CAF1 7226 118 + 1
AAACAAACAUGGAAUGCAAUUUCAGCCGCCAACAUGUGGAAAAUGCUGUAGCUUGUAAAUUUUUUUGGCAUGCGACAAAUAUUUCCCAC-AGAAG-GGGAGCCAGGACAUUAAUUUAUUG
...........((((..(((.((.(((.((..(.(((((.(((((.(((.((.(((.((.....)).))).)).)))..))))).))))-))..)-).).))...)).))).)))).... ( -22.10)
>consensus
_____GCCAUGAAAUGCAUUUUCUGCCGCCAACAUGUUGAAAAUGCUGUCGCUUGUACAAUU_UUUGGCAUGCGACAAAUAUUUCCCACCAAAAG_GGGAGCCAGAACUUUAAUUUAUGG
......(((((((..((((((((.((.........)).))))))))((((((.(((.(((....)))))).)))))).....(((((.........)))))............))))))) (-25.84 = -26.96 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:43 2006