| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,040,088 – 8,040,207 |
| Length | 119 |
| Max. P | 0.549001 |
| Location | 8,040,088 – 8,040,207 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -16.06 |
| Energy contribution | -16.06 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8040088 119 - 20766785 CUUUU-GCGGAAAAGGAAGAACUCCCUUCGUGACGCAGACAAAUUAGUGUAGUUAAAAUUAGCAGGCGACUAAUUUGAUUACGAGCUGAUGAAAAAUAUGCCGUCGUCAUGUCCUAGAGA ((((.-..(((.((((........))))(((((((....(((((((((((.((((....))))..)).)))))))))...(((.((.............))))))))))))))).)))). ( -27.72) >DroSec_CAF1 5099 119 - 1 CUUUU-GCGGAAAAGGAAGAACUCCCUUCGUGACGCAGACAAAUUAGUGCAGUUAAAAUUAGCAGGCGACUAAUUUGAUUACGAGCUGAUGAAAAAUAUGCCGUCGUCAUGUCCUAGAGA ((((.-..(((.((((........))))(((((((....(((((((((((.((((....))))..)).)))))))))...(((.((.............))))))))))))))).)))). ( -29.42) >DroEre_CAF1 3761 113 - 1 CUUUAAGUGG---AGCAGCAACUCCCUGC-UGACGUAGACAAAUUAGUGCAGUUAAAAUUAGCAGGCGACUAAUUUGAUUACGAGUUGAUGAAAAAUAUC---UCAUCAUGUCCUACAGA ......((((---..(((((......)))-)).(((((.(((((((((((.((((....))))..)).))))))))).)))))...((((((........---))))))....))))... ( -32.70) >DroYak_CAF1 3399 114 - 1 CUUCAAGUGG---CGCAACAACUCCCUUCGUGACGUAGACAAAUUAGUGCAGUUAAAAUUAGCAGGCGACUAAUUUGAUUACGAGCUGAUGAAAAAUAUC---UCGUCAUGUCCUACAGA ......((((---.(((............((..(((((.(((((((((((.((((....))))..)).))))))))).))))).))((((((........---))))))))).))))... ( -29.80) >DroAna_CAF1 5880 91 - 1 --------------------------UUCGUGACACAGACAAAUUAGUGUAGCUAAAAUUGGCAAGAGACUAAUUUGAUUACAGCCUGAUGAAAAAUAUC---CAGCCAUGUCGAGAAGA --------------------------(((.(((((....(((((((((.(.((((....))))...).)))))))))......((..((((.....))))---..))..))))).))).. ( -20.60) >consensus CUUUA_GCGG___AGCAACAACUCCCUUCGUGACGCAGACAAAUUAGUGCAGUUAAAAUUAGCAGGCGACUAAUUUGAUUACGAGCUGAUGAAAAAUAUC___UCGUCAUGUCCUACAGA .........................(((...((((....(((((((((((.((((....))))..)).))))))))).........((((((...........))))))))))...))). (-16.06 = -16.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:42 2006