Locus 2153

Sequence ID 2R_DroMel_CAF1
Location 8,022,585 – 8,022,679
Length 94
Max. P 0.757801
window3561

overview

Window 1

Location 8,022,585 – 8,022,679
Length 94
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 81.07
Mean single sequence MFE -34.06
Consensus MFE -23.42
Energy contribution -23.82
Covariance contribution 0.40
Combinations/Pair 1.18
Mean z-score -1.82
Structure conservation index 0.69
SVM decision value 0.49
SVM RNA-class probability 0.757801
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8022585 94 - 20766785
UGUACAUCUGUCCGCAGUAUUUACGCGCCUGUGU----GUGUGCGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGGGCUUAAACCCCAAAAA
.((...((((((((.((..(.(((((((....))----))))).)..)))))))))).))...(.(((.....))).).((((......))))..... ( -31.50)
>DroSec_CAF1 34585 96 - 1
UUUACAUCUGUCCGCAGUAUUUACGCGCCUGUGUAU--GUGUGUGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGUGCUUAAGCCCCUAAAA
(((((.((((((((.(((...(((((((........--))))))).))))))))))).((....)).)))))((((((.(((......))))))))). ( -33.30)
>DroSim_CAF1 35672 98 - 1
UUUACAUCUGUCCGCAGUAUUUACGCGCCUGUGUGUGUGUGUGUGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGGGCUUAAGCCCCUAAAA
(((((.((((((((..((((.(((((((......))))))).))))...)))))))).((....)).)))))......((((((....)))))).... ( -39.40)
>DroEre_CAF1 33951 81 - 1
-----AGCUGUCCGCAGUAUCUGCGUGUGUG------------UGCGCUCGGGCAGAGGCUUACGCAGUGGCUUUGGGAGGGGCUCAAGCACCCAAAA
-----.((..(.(((((...)))))((((((------------.((.(((.....))))).)))))))..))((((((....((....)).)))))). ( -29.20)
>DroYak_CAF1 34349 88 - 1
----CAUCGGUCCGCAGUAUCUACGUGUAUGU------GUGUCUGUGCUCGGGCAGAGGCUUACGCAGUGGAUUUGGGAGGGGCUCAAGCCCCAAAGA
----......(((.(((.(((((((((((...------((.(((((......))))).)).))))).))))))))))))(((((....)))))..... ( -36.90)
>consensus
U_UACAUCUGUCCGCAGUAUUUACGCGCCUGUGU____GUGUGUGCGCUUGGGCAGAGGCUUACGCAGUGAAUUUGGGAGGGGCUUAAGCCCCAAAAA
..........(((.(((.((((((((((..............))))((.(((((....))))).)).))))))))))))(((((....)))))..... (-23.42 = -23.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:36 2006