Locus 2152

Sequence ID 2R_DroMel_CAF1
Location 8,017,104 – 8,017,195
Length 91
Max. P 0.988969
window3560

overview

Window 0

Location 8,017,104 – 8,017,195
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 81.21
Mean single sequence MFE -21.36
Consensus MFE -13.34
Energy contribution -13.62
Covariance contribution 0.28
Combinations/Pair 1.28
Mean z-score -2.91
Structure conservation index 0.62
SVM decision value 2.14
SVM RNA-class probability 0.988969
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8017104 91 - 20766785
UAACUCAAAAACACCUAAAGUAAGUGUGCUUUUCAUAGCAUAUCAAAGAAAGAUUCUAGCCAUCUUUUUAGGUGGUUGAGAUUCAAUGAAA
...(((((...((((((......(((((((......)))))))....(((((((.......))))))))))))).)))))........... ( -24.30)
>DroSec_CAF1 31249 91 - 1
CAACUCAAAAAUGCUUACUUUAGGUGUGCUUCUCUUAGCAUAUCAAAGAAAAACUCUAGCCAUCUUCUUAGGUGGUUAAGAACCAAUGAAA
....(((..........((((.((((((((......))))))))))))......(((((((((((....)))))))).))).....))).. ( -24.10)
>DroSim_CAF1 32106 91 - 1
CAACUCAAAAAUGCUUACUUUAGGUGUGCUUCUCUUAGCAUAUCAAAGAAAAACUCUAGCCAUCUUCUUAGGUGGUUGAGAACCAAUGAAA
....(((..........((((.((((((((......)))))))))))).....(((.((((((((....)))))))))))......))).. ( -26.10)
>DroEre_CAF1 30963 91 - 1
CAACUCAAAAACGCUUACUUUAAGUGUGCUAUUCUUAAUUUAUCGAAGAAAGAUAUAAGCCAUCUUCUUAGGUGGUCGAGAACCACUGAAA
....(((...(((((((...)))))))....(((((....((((.......))))...(((((((....))))))).)))))....))).. ( -17.70)
>DroYak_CAF1 31188 90 - 1
CAACUCAAAAACGCUUCCAUUAAGUGGGCUAUUCUUAAUUUACCAUAAAAAGAUCUUU-UCAACUUCUUAGUUGGUUGAGAACCACUGAAA
......................(((((.....((((.............))))..(((-((((((........)))))))))))))).... ( -14.62)
>consensus
CAACUCAAAAACGCUUACUUUAAGUGUGCUUUUCUUAGCAUAUCAAAGAAAGAUUCUAGCCAUCUUCUUAGGUGGUUGAGAACCAAUGAAA
...(((.................(((((((......)))))))..............((((((((....)))))))))))........... (-13.34 = -13.62 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:35 2006