| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,006,840 – 8,006,954 |
| Length | 114 |
| Max. P | 0.934148 |
| Location | 8,006,840 – 8,006,954 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 77.96 |
| Mean single sequence MFE | -33.95 |
| Consensus MFE | -18.67 |
| Energy contribution | -20.42 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.934148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8006840 114 + 20766785 GUCGUGUCGCAAGACAAUGGGCAACCAUGUCGACACCACCACCAGGCCUGUCCCCACCGAAACAGUCCCGCCCACCCUGUCAUGGGGGACAGGCCACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))..........(((((((((((......((((...........))))....)))))))))))................... ( -46.20) >DroSec_CAF1 21086 114 + 1 GUCGUGUCGCAAGACAAUGGGCCACCAUGUCGACACCACCACCAGACCUGCCCCCACUGAAACAGUUCCGCCCACCCUGCCAUGGGGGACAGGACACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))............((((((((((.((...(((...........))).)))))))).))))..................... ( -34.70) >DroSim_CAF1 21738 114 + 1 GUCGUGUCGCAAGACAAUGGGCCACCAUGUCGACACCACCACCAGACCUGCCCCCACUGAAACAGUUCCGCCCACCCUGUCAUGGGGGACAGGACACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))............((((((((((.(((..(((...........)))))))))))).))))..................... ( -36.50) >DroEre_CAF1 20945 106 + 1 GUCGUGUCGCAAGACAAUGGGCCACCAUAUCGACACCCCAGGCC----UGCCUCCA----UAGCGUUCCGCCCACCCUGUCAUGGGGGACAGGACACAUCAUACUUUAAUCAAU ((((((((....))))((((....))))..))))......(.((----((((((((----(..((............))..))))))).)))).)................... ( -33.40) >DroYak_CAF1 21038 110 + 1 GUCGUGUCGCAAGAAAAUGGGCCACCAUAUCGACACCCCUAACCGCCACACCCCCA----AGCCGUUCCGCCCACCCUGUCAUGGGGGCCAGGACACAUCGAACUUUAAUCAAU ((((..((....))..((((....))))..))))......................----....((((.((((.((.......))))))..))))................... ( -23.60) >DroAna_CAF1 24614 94 + 1 GUCAUGGCGGAAGACAAUGGGCC--------------------GGGCCCUCCUUUACCGUUACGCUUCAGUUUGUCCUGUCAUGGGCGACAGGACACAUCGAACUUUAAUCAAU ....((((((.(((....((((.--------------------..))))...))).))))))...(((.((.(((((((((......))))))))).)).)))........... ( -29.30) >consensus GUCGUGUCGCAAGACAAUGGGCCACCAUGUCGACACCACCACCAGACCUGCCCCCAC_GAAACAGUUCCGCCCACCCUGUCAUGGGGGACAGGACACAUCGAACUUUAAUCAAU ((((((((....))))((((....))))..))))..............................((((.(.((.(((......))))).).))))................... (-18.67 = -20.42 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:28 2006