Locus 2142

Sequence ID 2R_DroMel_CAF1
Location 7,986,729 – 7,986,820
Length 91
Max. P 0.893583
window3549

overview

Window 9

Location 7,986,729 – 7,986,820
Length 91
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 67.15
Mean single sequence MFE -17.54
Consensus MFE -6.84
Energy contribution -7.45
Covariance contribution 0.61
Combinations/Pair 1.42
Mean z-score -1.98
Structure conservation index 0.39
SVM decision value 0.98
SVM RNA-class probability 0.893583
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7986729 91 - 20766785
CUACCUC---CUCCUCCACCUCCUCAGACUCCGCAGCCGCUUCUGUAGUGGCG---UCCGCUUCGAUGGCCUCAUCCAGCUGCUUUUCAUCCUCCUC----
.......---......................(((((((((.....)))))).---...(((..((((....)))).))))))..............---- ( -18.10)
>DroSec_CAF1 2517 95 - 1
CUCCCUC---CUCCUCCACCUCCUCAGAUUCCGCAGCCGCUUCUGAAGUGGCG---UCCGCUUCGAUGGCCUCAUCCAGCUGCUUCUCANNNNNNNNNNNN
.......---......................(((((.......(((((((..---.)))))))((((....))))..))))).................. ( -19.80)
>DroEre_CAF1 2200 85 - 1
CUUCCUC---CUCC------UCCUCAGGCUCAGCAGCCGCUUCUGUAGUGGCC---UCCGCCUCGAUGGCCUCAUCCAGCUGCUUCUCAUCCUCCUC----
.......---....------.....(((..((((.((((((.....)))))).---...(((.....)))........))))..)))..........---- ( -19.90)
>DroYak_CAF1 2103 85 - 1
CUUCCUC---CUCC------UCCUCAGGCUCAGCAGCCGCUUCAGUAGUGGCC---UCCGCCUCGAUGGCCUCGUCCAGCUGCUUCUCAUCCUCCUC----
.......---....------.....(((..((((.((((((.....)))))).---...(((.....)))........))))..)))..........---- ( -19.90)
>DroMoj_CAF1 3751 85 - 1
CUGCCUC---CGCU------GCCUUAGUUUCU---GCAUCAUUCGAUUCAGUCUGAUCUGAUGCAAGUGCUUCAUCUAGCUGCUUCUCAUCCGCUUC----
.......---.(((------(....(((...(---((((((...((((......)))))))))))...))).....)))).................---- ( -15.20)
>DroAna_CAF1 2103 79 - 1
ACUCUUCAGUUUCC------UCCUCA---------GCUUCUUUGGGAUCAGCC---UCGGCCUCGAUAGCUUCAUCUAACUGUUUCUCAUCCUCCUC----
......(((((...------.....(---------(((...(((((..(....---..)..))))).))))......)))))...............---- ( -12.34)
>consensus
CUUCCUC___CUCC______UCCUCAGACUCAGCAGCCGCUUCUGUAGUGGCC___UCCGCCUCGAUGGCCUCAUCCAGCUGCUUCUCAUCCUCCUC____
........................(((........((((((.....)))))).......(((.....))).........)))................... ( -6.84 =  -7.45 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:24 2006