| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,540,688 – 1,540,795 |
| Length | 107 |
| Max. P | 0.859473 |
| Location | 1,540,688 – 1,540,795 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 87.76 |
| Mean single sequence MFE | -38.56 |
| Consensus MFE | -29.02 |
| Energy contribution | -30.38 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1540688 107 + 20766785 CCCUCAGUGACCAGCCGGUAAGCGGCGCUGAGCACGACGUUCUCCAGUGAUAAGCGCGCCGAUAGGCGGGAAAACGUCGUGCGUGCAGCUACAAAUGUAUAUAUAUA ......(((....((((.....))))((((.((((((((((.(((.((.....)).((((....))))))).))))))))))...)))))))............... ( -44.40) >DroSec_CAF1 1198 107 + 1 CCCUCAGCGACCAGCUGGUAAGCGGCGCUGAGCACGACGUUCUACAGUGAUAAGCGCGCCGAUAGGCGGGAAAACGUCGUGCGUGCAGCUACCAAUGUAUACAUAUA ...((((((.((.(((....)))))))))))((((((((((((...((.....)).((((....)))))))..)))))))))(((((........)))))....... ( -43.30) >DroSim_CAF1 1209 107 + 1 CCCUCAGCGACCAGCCGGUAAGCGGCGCUGAGCACGACGUUCUCCAGUGAUAAGCGCGCCGAUAGGCGGGAAAACGCUGUGCGUGCAGCUACCAAUGUAUACAUAUA ...((((((.((.((......))))))))))(((((.((((.(((.((.....)).((((....))))))).)))).)))))(((((........)))))....... ( -39.60) >DroEre_CAF1 2504 102 + 1 CCCUCAGCGACUAGCCGGUAAACGGCGCUGAGCACGACGUUCUCCAGUGAUAAGCGCGCCUAUAGGCGGA-AAACGCGGUGCGU----UCACCAUAGCAUACAUAUA ..((((((.....((((.....))))))))))..((.((((.(((.(((.....)))(((....))))))-.))))))((((..----........))))....... ( -34.90) >DroYak_CAF1 2513 107 + 1 CCCUCAACGACUAGCCGGUAAACGGCACUGAGCACUUCGUUCUCCAGUGAUAAGCGCGCCUAUAGGCGGGAAAUCACCGUGCGUGCAGUUACCAUAGCAUACAUAGA ........(.(((...(((((...((((.((((.....))))....(((((...(.((((....)))).)..))))).....))))..))))).))))......... ( -30.60) >consensus CCCUCAGCGACCAGCCGGUAAGCGGCGCUGAGCACGACGUUCUCCAGUGAUAAGCGCGCCGAUAGGCGGGAAAACGCCGUGCGUGCAGCUACCAAUGUAUACAUAUA .............((((.....))))((((.(((((.((((.(((.((.....)).((((....))))))).)))).)))))...)))).................. (-29.02 = -30.38 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:37 2006