Locus 2134

Sequence ID 2R_DroMel_CAF1
Location 7,967,578 – 7,967,681
Length 103
Max. P 0.509007
window3537

overview

Window 7

Location 7,967,578 – 7,967,681
Length 103
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.04
Mean single sequence MFE -23.88
Consensus MFE -12.15
Energy contribution -12.15
Covariance contribution 0.00
Combinations/Pair 1.19
Mean z-score -1.69
Structure conservation index 0.51
SVM decision value -0.05
SVM RNA-class probability 0.509007
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7967578 103 - 20766785
ACAACGGCAAA--GAACAACAUCUAGAUCAAC--AG--UGAGCAGGAUUUC--AUGGCGAAAUCCUUUACCUUUUCAUUCCACUCUUGGUUAUACGAUUGAGAUUCGUCGA
....((((...--...................--.(--(((..((((((((--.....)))))))))))).............(((..(((....)))..)))...)))). ( -21.10)
>DroPse_CAF1 17574 102 - 1
ACGGCGACAA---GAACAACGUCAAUAAUCAG--UU--UGAGGAGGAUUUC--GAAGCGAAAUCCUUUACCUUUUCGGUCCACUCUUGGUUAUAUGAUUGAGAUUCGUCGA
.((((((...---...((..((((((((((((--..--.((((((((((((--(...)))))))))).(((.....)))...))))))))))).))))))....)))))). ( -29.00)
>DroGri_CAF1 5371 107 - 1
ACAACAACAACGAUAAUAACAUCAAUAAGUAG--UUAAGUAGAAGGAUUUC--AUUGUGAAAUCCUUUACCUUUUCAUUCCAUUCGGGAUUAUAUGAUUGAGAUUCAUCGA
..........(((((((....(((((..((((--..(((..((((((((((--.....))))))))))..)))..)(((((....))))))))...))))).))).)))). ( -24.60)
>DroWil_CAF1 22639 103 - 1
ACAAAAGAAA----AAAUACAUCAAU--UCACUUUG--UGAGAAGGAUUUCUCAUAGCGAAAUCCUUUACCUUUUCAUUCCAUUCUGGAUUAUACGAUUGAGAUUCAUCGA
......((((----(...........--((((...)--)))((((((((((.......))))))))))...)))))..(((.....))).....((((.(.....))))). ( -20.10)
>DroAna_CAF1 4957 93 - 1
----------A--ACACAACAUCUAGAUCAAC--AU--UGAGAAGGAUUUC--GAGGCGAAACCCUUUACCUUUUCGUUCCACUCUUGGUUAUACGAUUGGGAUUCGUCGA
----------.--............(((....--..--...(((((.((((--(...))))).))))).(((..((((.(((....)))....))))..)))....))).. ( -19.50)
>DroPer_CAF1 17357 102 - 1
ACGGCGACAA---GAACAACGUCAAUAAUCAG--UU--UGAGGAGGAUUUC--GAAGCGAAAUCCUUUACCUUUUCGGUCCACUCUUGGUUAUAUGAUUGAGAUUCGUCGA
.((((((...---...((..((((((((((((--..--.((((((((((((--(...)))))))))).(((.....)))...))))))))))).))))))....)))))). ( -29.00)
>consensus
ACAACGACAA___GAACAACAUCAAUAAUCAC__UU__UGAGAAGGAUUUC__AAAGCGAAAUCCUUUACCUUUUCAUUCCACUCUUGGUUAUACGAUUGAGAUUCGUCGA
.........................................((((((((((.......))))))))))...............(((..(((....)))..)))........ (-12.15 = -12.15 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:13 2006