Locus 2130

Sequence ID 2R_DroMel_CAF1
Location 7,963,061 – 7,963,158
Length 97
Max. P 0.545580
window3532

overview

Window 2

Location 7,963,061 – 7,963,158
Length 97
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.41
Mean single sequence MFE -40.45
Consensus MFE -27.97
Energy contribution -28.62
Covariance contribution 0.65
Combinations/Pair 1.33
Mean z-score -1.80
Structure conservation index 0.69
SVM decision value 0.02
SVM RNA-class probability 0.545580
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7963061 97 - 20766785
UCGCCAGUGUGAUGCCAUUGUCUGGUGUCUGCUGGAGUGGGU-GCAU-CCCUGCUAGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUUCAGGGUGGCAG
..((((.(.((((((((((.(((((((..(((((.((..((.-....-.))..))..)))))..)))))))......)))).)))..))).).)))).. ( -42.40)
>DroSec_CAF1 15002 97 - 1
UCGCCAGUGUGAUGCCAUUUUCUGGUGGCUGCUGGAGUGGGU-GCAU-CCCUGCUGGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUUCAGGGUGUCAG
.........(((((((.(((((((((((((((..(...(((.-....-)))..)..)))))...)))))))))).(((........)))..))))))). ( -39.30)
>DroSim_CAF1 14728 97 - 1
UCGCCAGUGUGACUCCAUUGUCUGGUGGCUGCUGGAGUGGGU-GCGU-CCCUGCUGGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUUCAGGGUGUCAG
.((((..(((.(((((.((.((((((((((((..(...(((.-....-)))..)..)))))...))))))).)))).)))..)))......)))).... ( -37.90)
>DroEre_CAF1 15085 97 - 1
UCGCCAGUGUGAUGCCAUUGUCUGGUGGCUGCUGGUGUGGGU-GCCU-CCCUACUGGCGGCCGUUGCCGGAAGAGGAAGUGAGCAAUCCAGGAUGGUAG
..((((.((.(((((((((.((((((((((((..(((.(((.-....-))))))..))))))...))))))......)))).)).)))))...)))).. ( -41.70)
>DroYak_CAF1 15041 93 - 1
UCGCCAGUGUGGUGCCAUUGUCUGGUGGCUGCUGGAGUGGGU-GCC--CCGUGCUGGCG---GUUGCCGGAAGAGGAAGUGAGCAAUCGAGGGUGGCAG
..((((.(.((((((((((.(((((..(((((..(..((((.-..)--)))..)..)))---))..)))))......)))).)).))))..).)))).. ( -43.50)
>DroAna_CAF1 13806 99 - 1
CUCUCUGUGUGGCAGCAUAGUCUGGUGACUCUGGGUGUGGGCAGCCUCCCCUGCCGACGGCAAUCGCCGGAAGAGGAAGUGAGCAAUCCGCAGAGACAG
.((((((((..((.((.(..((((((((.....(.(((.(((((......))))).))).)..))))))))..)....))..))....))))))))... ( -37.90)
>consensus
UCGCCAGUGUGAUGCCAUUGUCUGGUGGCUGCUGGAGUGGGU_GCCU_CCCUGCUGGCGGCAAUCGCCGGAAGAGGAAGUGAGCAAUCCAGGGUGGCAG
..((((.(.((((((((((.(((((((((((((((...(((.......)))..)))))))...))))))))......)))).)))..))).).)))).. (-27.97 = -28.62 +   0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:08 2006