Locus 2127

Sequence ID 2R_DroMel_CAF1
Location 7,958,126 – 7,958,246
Length 120
Max. P 0.744402
window3528

overview

Window 8

Location 7,958,126 – 7,958,246
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.64
Mean single sequence MFE -34.78
Consensus MFE -25.69
Energy contribution -26.74
Covariance contribution 1.05
Combinations/Pair 1.11
Mean z-score -1.86
Structure conservation index 0.74
SVM decision value 0.46
SVM RNA-class probability 0.744402
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7958126 120 + 20766785
AAGAGAUUCCGAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACAACAUUCAACCGACAAAGAAGACAAACAACACCACCCACAUAGUGCGCCCACUUUUUAGUGGCCUUGUGCAAA
................((((((((.((.....))(((.((((((......))))))..))).................))))))))....((((((((((....)))))....))))).. ( -34.00)
>DroSec_CAF1 9821 120 + 1
AAGAGAUUGCAAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACCACAUCCAACCGACAAAGAAGACAAACAACACCACCCACAUAGUGGGCCCACUUUUUAGUGGCCUUGUGCAAA
......(((((.....((((((((.((.....))(((.((((((......))))))..))).................)))))))).....(((((.(((....))))))))..))))). ( -40.30)
>DroSim_CAF1 9859 120 + 1
AAGAGAUUGCAAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACCACAUCCAACCGACAAAGAAGGCAAACAACACCACCCACAUAGUGCGCCCACUUUUUAGUGGCCUUGUGCAAA
......(((((.((((((((((((.((.....))(((.((((((......))))))..))).................)))))))).....))))(((((....))))).....))))). ( -38.50)
>DroEre_CAF1 10101 110 + 1
AAAAGAAUCCGAGUGCGUGGGUAGC-CACA--------UUGGGUUACAACAUCCAACCGCCGAAAAUG-GAAAUAACACCACCCACGAAGUUCGCCCACUUCUUAGUGGCCUCGUGCAAA
....((((....(((.(((((((((-(...--------...))))))....((((...........))-)).......)))).)))...))))(.(((((....))))).)......... ( -28.60)
>DroYak_CAF1 10121 111 + 1
CAGAGAUUCCGAGUGCGUGGGUAGCCCACA--------UUGGGUUACAACAUACAACCGCCAAAAAUG-GAAAUAACACCACCCACGAAGUUCGCCCACUUCUUAGUGGCCUCGUGCAAA
..(((....((((..((((((((((((...--------..)))))))............(((....))-)............)))))...)))).(((((....))))).)))....... ( -32.50)
>consensus
AAGAGAUUCCGAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACAACAUCCAACCGACAAAGAAG_CAAACAACACCACCCACAUAGUGCGCCCACUUUUUAGUGGCCUUGUGCAAA
.........((((.(((((((((((((.....)))...((((((......))))))......................))))))))..........((((....))))))))))...... (-25.69 = -26.74 +   1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:04 2006